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Lange, Matthias; Laporte, Marie-AngĂ©lique; Michotey, CĂ©lia; Oppermann, Markus; Ostler, Richard; Poorter, Hendrik; RamıÌrez-Gonzalez, Ricardo; RamĆĄak, Ćœiva; Reif, Jochen C.; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Scholz, Uwe; Tardieu, François; Uauy, Cristobal; Usadel, Björn; Visser, Richard G. F.; Weise, Stephan; Kersey, Paul J.; Miguel, CĂ©lia M.; Adam-Blondon, Anne-Françoise; Pommier, Cyril (2020).
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community in various implementations, ranging from end-user ready cyber-platforms in the cloud such as DIRT and PlantIt to programming frameworks for software developers such as PlantCV. Many research groups are focused on developing systems using the
Breeding API, a Standardized RESTful Web Service API Specification for communicating Plant Breeding Data.
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O'Leary, M. A.; Bloch, J. I.; Flynn, J. J.; Gaudin, T. J.; Giallombardo, A.; Giannini, N. P.; Goldberg, S. L.; Kraatz, B. P.; Luo, Z.-X.; Meng, J.; Ni, X.; Novacek, M. J.; Perini, F. A.; Randall, Z.; Rougier, G. W.; Sargis, E. J.; Silcox, M. T.; Simmons, N. B.; Spaulding, M.; Velazco, P. M.; Weksler,
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Papoutsoglou, Evangelia A.; Faria, Daniel; Arend, Daniel; Arnaud, Elizabeth; Athanasiadis, Ioannis N.; Chaves, InĂȘs; Coppens, Frederik; Cornut, Guillaume; Costa, Bruno V.; Äwiek-KupczyĆska, Hanna; Droesbeke, Bert; Finkers, Richard; Gruden, Kristina; Junker, Astrid; King, Graham J.; Krajewski, PaweĆ;
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The
European research infrastructure for plant phenotyping, EMPHASIS, enables researchers to use facilities, services and resources for multi-scale plant phenotyping across Europe. EMPHASIS aims to promote future food security and agricultural business in a changing climate by enabling scientists to
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In plant sciences, phenomics research occurs in both field and controlled environments. Field phenomics encompasses the measurement of phenotypes that occur in both cultivated and natural conditions, whereas controlled environment phenomics research involves the use of glass houses, growth chambers,
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The
International Plant Phenotyping Network (IPPN) is an organization that seeks to enable exchange of knowledge, information, and expertise across many disciplines involved in plant phenomics by providing a network linking members, platform operators, users, research groups, developers, and policy
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A Minimal
Information About a Plant Phenotyping Experiment (MIAPPE) standard is available and in use among many researchers collecting and organizing plant phenomics data. A diverse set of computer vision methods exist to analyze 2D and 3D imaging data of plants. These methods are available to the
87:, which changes over time, due to development and aging or through metamorphosis such as when a caterpillar changes into a butterfly. The term phenomics was coined by UC Berkeley and LBNL scientist Steven A. Garan. As such, it is a transdisciplinary area of research that involves
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The
Australian Plant Phenomics Facility (APPF), an initiative of the Australian government, has developed a number of new instruments for comprehensive and fast measurements of phenotypes in both the lab and the field.
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Bao, Yin; Zarecor, Scott; Shah, Dylan; Tuel, Taylor; Campbell, Darwin A.; Chapman, Antony V. E.; Imberti, David; Kiekhaefer, Daniel; Imberti, Henry; LĂŒbberstedt, Thomas; Yin, Yanhai;
107:(physical and biochemical traits) that can be produced by a given organism over the course of development and in response to genetic mutation and environmental influences.
45:
References need to be checked whether they actually support the statements made. I checked a few and neither even mentioned "phenome" or "phenomics".
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makers. Regional partners include, the
European Plant Phenotyping Network (EPPN), the North American Plant Phenotyping Network (NAPPN), and others.
159:'s Field Scanner in Maricopa, Arizona is a platform developed to measure field phenotypes. Controlled environment systems include the Enviratron at
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Schilling, C.H.; Edwards, J.S.; Palsson, B.O. (1999). "Toward metabolic phenomics: analysis of genomic data using flux balances".
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M.; Wible, J. R.; Cirranello, A. L. (2013). "The placental mammal ancestor and the post-K-Pg radiation of placentals".
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Bilder, R.M.; Sabb, F.W.; Cannon, TD; London, ED; Jentsch, JD; Parker, DS; Poldrack, RA; Evans, C; Freimer, NB (2009).
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Technical challenges involve improving, both qualitatively and quantitatively, the capacity to measure phenomes.
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397:– via The Food and Agriculture Organization (FAO) is a specialized agency of the United Nations.
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The TerraRef Gantry System of the
University of Arizona on the fields of the Maricopa Research Center
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531:; Lawrence-Dill, Carolyn J.; Whitham, Steven A.; Tang, Lie; Howell, Stephen H. (23 October 2019).
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Houle, David; Govindaraju, Diddahally R.; Omholt, Stig (2010). "Phenomics: the next challenge".
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Houle, David; Govindaraju, Diddahally R.; Omholt, Stig (2010). "Phenomics: the next challenge".
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and other fields. Phenomics is concerned with the measurement of the phenotype where a
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better understand plant performance and translate this knowledge into application.
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An organism's phenotype changes with time. The relationship between phenotype and
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PlantIt: free image-based plant phenotyping automation in the cloud
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585:"Enabling reusability of plant phenomic datasets with MIAPPE 1.1"
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and other systems where growth conditions can be manipulated.
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is the systematic study of traits that make up an organisms
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383:"Concept of phenomics and its development in plant science"
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678:NAPPN - North American Plant Phenotyping Network
533:"Assessing plant performance in the Enviratron"
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667:IPPN - International Plant Phenotyping Network
175:Standards, methods, tools, and instrumentation
745:(2002). "Phenomics: fiction or the future?".
114:enables researchers to understand and study
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68:Learn how and when to remove this message
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634:Digital Imaging of Root Traits (DIRT)
188:Research coordination and communities
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381:Guanghui, Yu; Xuanjun, Fang (2009).
165:Donald Danforth Plant Science Center
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324:"Welcome to the Phenomics Journal"
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118:. Phenomics concepts are used in
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16:Systematic study of phenotypes
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43:. The specific problem is:
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341:10.1007/s43657-020-00009-4
550:10.1186/s13007-019-0504-y
157:The University of Arizona
387:Molecular Plant Breeding
218:Human Phenotype Ontology
747:Trends in Neurosciences
477:10.1126/science.1229237
413:Nature Reviews Genetics
289:Nature Reviews Genetics
124:pharmaceutical research
707:Biotechnology Progress
322:Jin, Li (2021-02-01).
134:, and increasingly in
161:Iowa State University
132:agricultural research
128:metabolic engineering
213:Phenotype microarray
50:improve this article
39:to meet Knowledge's
798:Branches of biology
469:2013Sci...339..662O
120:functional genomics
719:10.1021/bp9900357
602:10.1111/nph.16544
463:(6120): 662â667.
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787:Categories
743:Gerlai, R.
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116:pleiotropy
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112:genotype
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