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GISAID

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237: 508:, users of GISAID must have their identity confirmed and agree to a Database Access Agreement that governs the way GISAID data can be used. These Terms of Use are "weighted in favour of the data provider and gives them enduring control over the genetic data they upload". They prevent users from sharing any data with other users who have not agreed to them, and require that users of the data must credit the data generators in published work, and also make a reasonable attempt to collaborate with data generators and involve them in research and analysis that uses their data. 3687: 4284: 4296: 520:. GISAID's Data Access Agreement addresses this directly to promote sharing data. GISAID's procedures additionally suggest that those who access the EpiFlu database consult the countries of origin of genetic sequences and the researchers who discovered the sequences. As a result, the GISAID license has been important in rapid pandemic preparedness. However, these restrictions evidence common criticisms to 516:. While most public interest experts agree with GISAID that influenza sequence data should be made public, and this is the subject of agreement by many researchers, some provide the information only after filing patent claims while others have said that access to it should be only on the condition that no patents or other intellectual property claims are filed, as was controversial with the 417:
over 170 different countries. Only three months later, the number of uploaded SARS-CoV-2 sequences had doubled again, to over 2.4 million. By late 2021, the database contained over 5 million genome sequences; as of December 2021, over 6 million sequences had been submitted; by April 2022, there were 10 million sequences accumulated; and in January 2023 the number had reached 14.4 million.
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GISAID further required that data users not only give credit to data submitters, but make maximum efforts to work with and include them in joint analyses on viral sequence data, further tipping the scales in favor of collaboration. This mandated sharing of not only data, but the benefits of research,
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for a new Global Initiative on Sharing Avian Influenza Data (later, "All" would replace "Avian"), whereby its members would release data in publicly available databases up to six months after analysis and validation. Initially the organisation collaborated with the Australian non-profit organization
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noting in 2009 that that "a previous data-sharing system run by WHO forced them to give up intellectual property rights to their virus samples when they sent them to WHO. The virus samples would then be used by private pharmaceutical companies to make vaccines that are awarded patents and sold at a
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noted the incentives of various potential competitors in the field, for whom GISAID is an obstacle to consolidation of control over the field, and also noted that GISAID's position inevitably places it at the center of disputes between groups of scientists, which will tend to result in the losing
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GISAID maintains what has been described as "the world's largest repository of COVID-19 sequences", and "by far the world's largest database of SARS-CoV-2 sequences". By mid-April 2021, GISAID's SARS-CoV-2 database reached over 1,200,000 submissions, a testament to the hard work of researchers in
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of scientific data in GISAID. By 2021, the ministry was no longer involved with either database hosting nor curation. In 2013 GISAID dissolved a nonprofit organisation based in Washington DC and the organisation began to be operated by a German association called Freunde von GISAID (Friends of
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points out that the lack of transparency in access to the database also prevents many scientists from even criticising the platform. A paper from 2017 describing the success of GISAID mentions that revoking researchers' credentials was rare, but it did happen. The same publication described a
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GISAID's restrictions on access have led to conflict with "labs and institutions whose priorities are academic rather than driven by the immediate priorities of public health protection". In January 2021, GISAID's restricted access led a group of scientists to write an open letter asking for
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A difficulty that GISAID's Data Access Agreement attempts to address is that many researchers fear sharing of influenza sequence data could facilitate its misappropriation through intellectual property claims by the vaccine industry and others, hindering access to vaccines and other items in
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Towards the end of 2006, Indonesia announced it would not share samples of avian flu with the WHO which led to a global health crisis due to an ongoing epidemic. By October 2006, Indonesia had agreed to share their data with GISAID, which their health minister considered to have a "fair and
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The Scientific Advisory Council (SAC) advises and supports the Initiative in pursuit of its public health and scientific objectives. Its members are leading scientists with expertise in virology, microbiology, computational and molecular biology, epidemiology, evolutionary genomics and
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has resulted in a paradigm shift which helps to put contributors from higher or lower resource settings on the same footing. ... Adopting a system of credit sharing similar to GISAID's would ensure that regardless of resource setting, data depositors are incentivized and recognized.
437:. GISAID stated that they do not delete records from their database, but data may become temporarily invisible during updates or corrections. Availability of the data was restored, with an additional restriction that any analysis based thereon would not be shared with the public. 36: 1795:
China, Russia and other nations that have long withheld influenza-virus samples and DNA-sequencing data from the international community are also taking part in the initiative, saying it offers full transparency and, for the first time, basic protection of intellectual-property
500:, it was further noted that scientists in North America and Europe sought unrestricted access, with "scientists from Africa requiring sufficient protections for those who generate and share data as per the GISAID terms and conditions". Unlike public-domain databases such as 527:
GISAID describes itself as "open access", which is naturally replicated by the media and in journal publications. This description indeed aligns with the original announcement of the consortium, which also mentioned depositing the data to the databases participating in the
543:, the world's leading provider of digital object identifiers (DOI) for research data, affirmed the designation of access to GISAID's database and data as Open Access". However, after several researchers had their accounts suspended in March 2023 as reported by the journal 445:
The board of Friends of GISAID consists of Peter Bogner and two German lawyers who are not involved in the day-to-day operations of the organisation. Scientific advice to the organization is provided by its Scientific Advisory Council, including directors of leading
203:, as well as other pathogens. The database has been described as "the world's largest repository of COVID-19 sequences". GISAID facilitates genomic epidemiology and real-time surveillance to monitor the emergence of new COVID-19 viral strains across the planet. 280:, Capua persuaded participants to agree to each sequence and release data on 20 strains of influenza. Some scientists had concerns about sharing their data in case others published scientific papers using the data before them, but Capua dismissed this telling 4139: 429:
was detected in South Africa, by quickly uploading the sequence to GISAID, the National Institute for Communicable Diseases there was able to learn that Botswana and Hong Kong had also reported cases possessing the same gene sequence.
272:(GISRS). Countries provided samples to the WHO but the data was then shared with them for free with pharmaceutical companies who could patent vaccines produced from the samples. Beginning in January 2006, Italian researcher 407:
The GISAID model of incentivizing and recognizing those who deposit data has been recommended as a model for future initiatives; Because of this work, the entity has been described as "a critical shield for humankind".
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data was shared through GISAID. Throughout the first year of the COVID-19 pandemic, most of the SARS-CoV-2 whole-genome sequences that were generated and shared globally were submitted through GISAID. When the
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similarly reported that GISAID's in-house counsel was developing new governance processes intended to be transparent and allow for the resolution of scientific disputes without the involvement of Bogner.
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Nasri, Ferdous; Kongkitimanon, Kunaphas; Wittig, Alice; Cortés, Jorge Sánchez; Brinkmann, Annika; Nitsche, Andreas; Schmachtenberg, Anna-Juliane; Renard, Bernhard Y.; Fuchs, Stephan (March 13, 2023).
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The omicron variant... accounted for 78% of genetically sequenced positive New York COVID samples uploaded to GISAID, the world's largest repository of COVID-19 sequences, over the last two weeks.
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Since its establishment as an alternative to sharing avian influenza data via conventional public-domain archives, GISAID has facilitated the exchange of outbreak genome data during the
2655: 4084: 288:, a German in his 40s based in the US and who previously had no experience in public health, read an article about Capua's call and helped to found and fund GISAID. Bogner met 365:, that GISAID had entered into a cooperation agreement with the German government, making Germany the long-term host of the GISAID platform. Under the agreement, Germany's 4048: 2064: 3987: 341:(SIB) announced a cooperation agreement, with the SIB building and administering the EpiFlu database on behalf of GISAID. Ultimately, GISAID was launched in May 2008 in 2022:"Germany's Statement on Substantive Issues and Concerns Regarding the PIP Framework and its Implementation, Special Session of the PIP Advisory Group, October 13, 2015" 2544:
During the first year of the pandemic, a large number of SARS-CoV-2 whole-genome sequences were generated from all around the world and shared, mostly through GISAID.
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has argued that because it does not allow sequences to be reshared publicly, it hampers efforts to understand the coronavirus and the rapid rise of new variants.
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According to GISAID, the percentage of all active users whose access credentials to the GISAID platform have been revoked at the time of writing is around 0.16%.
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refused to upload her data to a closed database and called for genomic data on H5N1 avian influenza to be in the public domain. At a conference of the
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that Bogner had said that "GISAID will soon launch an independent compliance board 'responsible for addressing a wide range of governance matters'".
386: 269: 3355: 536:, highlighting the differences while other researchers have signed an open letter calling for the use of any of the INSDC's unrestricted databases. 796: 277: 4362: 4078: 1513: 4145: 245: 2969:"Open Access DNA, RNA and Amino Acid Sequences: The Consequences and Solutions for the International Regulation of Access and Benefit Sharing" 389:
and shared through GISAID in mid January 2020. Since 2020, millions of SARS-CoV-2 genome sequences have been uploaded to the GISAID database.
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More than 1.2 million coronavirus genome sequences from 172 countries and territories have now been shared on a popular online data platform
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the global sampling of SARS-CoV-2 is being very capably addressed by the Global Initiative for Sharing All Influenza Data (GISAID) database
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With more than 700,000 genomes from more than 160 countries, GISAID is by far the world's largest database of SARS-CoV-2 sequences
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In 2009 SIB disconnected the database from the GISAID portal over a contract dispute, resulting in litigation. In April 2010 the
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LoTempio, Jonathan; Spencer, D'Andre; Yarvitz, Rebecca; Vilain, Arthur Delot; Vilain, Eric; Délot, Emmanuèle (August 19, 2020).
4352: 4115: 3892: 550: 540: 2141: 4072: 3970: 2246:"We Can Do Better: Lessons Learned on Data Sharing in COVID-19 Pandemic Can Inform Future Outbreak Preparedness and Response" 1634: 1134: 369:
was to ensure the sustainability of the initiative by providing technical hosting facilities, and the Federal Institute for
4357: 3828: 1377:"Wuhan pneumonia: Hong Kong set to develop new test for mystery virus after obtaining genetic sequence from mainland China" 1709: 4098: 404:, to focus on bioinformatics education, advance pathogen genomic surveillance, and increased regional response capacity. 2824: 1595: 268:
Since 1952, influenza strains had been collected by National Influenza Centers (NICs) and distributed through the WHO's
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transparent" mechanism for sharing data. It was one of the first countries to do so. In February 2007, GISAID and the
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Zuiderwijk, Anneke; Janssen, Marijn; Choenni, Sunil; Meijer, Ronald; Alibaks, Roexsana Sheikh (December 1, 2012).
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Van Noorden, Richard (February 11, 2021). "Scientists call for fully open sharing of coronavirus genome data".
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Van Noorden, Richard (February 11, 2021). "Scientists call for fully open sharing of coronavirus genome data".
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In March 2023, GISAID temporarily suspended database access for some scientists, removing raw data relevant to
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on the occasion of the 61st World Health Assembly, as a registration-based database rather than a consortium.
3919: 3836: 3804: 3574:"Data, disease and diplomacy: GISAID's innovative contribution to global health: Data, Disease and Diplomacy" 3013:"Ethics and governance challenges related to genomic data sharing in southern Africa: the case of SARS-CoV-2" 2890:"Ethics and governance challenges related to genomic data sharing in southern Africa: the case of SARS-CoV-2" 2630: 4249: 3768: 3707: 3071:
Maxmen, Amy (May 13, 2021). "Why some researchers oppose unrestricted sharing of coronavirus genome data".
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for Influenza. In 2023, GISAID's lack of transparency was criticized by some GISAID funders, including the
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reported these issues continue as well as the lack of transparency of its governance. An investigation by
3877: 3800: 3742: 393: 354: 293: 225: 4337: 3857: 2325:"OPrevalence of COVID-19's Delta variant among specimens sequenced over past 4 weeks exceeded 75%: WHO" 1025:"Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus" 426: 285: 241: 115: 586:"perceived merit in GISAID's formula for balancing the need for control and openness". In April 2023, 296:'s influenza division at a conference, and Cox went on to chair GISAID's Scientific Advisory Council. 4342: 4027: 3981: 3011:
Moodley, K; Cengiz, N; Domingo, A; Nair, G; Obasa, AE; Lessells, RJ; de Oliveira, T (December 2022).
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International Conference on Computational Intelligence Methods for Bioinformatics and Biostatistics
4010: 669:"OpenCorporates information for US, D.C. Company "GLOBAL INITIATIVE ON SHARING ALL INFLUENZA DATA"" 447: 218: 3123: 2431:"Could China's COVID-19 outbreak lead to the next variant of concern? Here's what the experts say" 4367: 4288: 4254: 3897: 3750: 3700: 3495: 3330: 2282:"This man created our best chance of stopping the next pandemic but now he is under attack. Why?" 487:
The creation of the GISAID database was motivated in part by concerns raised by researchers from
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announced during the 7th International Ministerial Conference on Avian and Pandemic Influenza in
210: 643:, District of Columbia Department of Consumer and Regulatory Affairs, Initial File Number 263748 4218: 3958: 3746: 2089: 930: 521: 468: 459: 289: 64: 2167: 4239: 3852: 2347:"Georgia State Researchers Develop Rapid Computer Software To Track Pandemics As They Happen" 2333:
as of July 20, a total of over 2.4 million SARS-CoV-2 sequences have been submitted to GISAID
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SARS-CoV-2 sequences to be deposited in open databases, which was replicated in the journals
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Quirk, Mary (October 2006). "Non-WHO global initiative on sharing avian influenza data".
741: 513: 474: 455: 3760: 3686: 3589: 3534: 3397: 3292: 3084: 2758: 2709:"'Being truthful is essential': scientist who stumbled upon Wuhan Covid data speaks out" 2481: 2456: 2389: 1852: 1740: 1684: 1188: 962: 4327: 4269: 4173: 3976: 3619: 3606: 3573: 3554: 3419: 3312: 3253: 3228: 3204: 3179: 3104: 3050: 3037: 3012: 2919: 2778: 2535: 2411: 2183: 1874: 1760: 1571: 1494: 1481: 1456: 1205: 1172: 1049: 1024: 976: 896: 871: 812: 558: 3947:
Microsoft Research - University of Trento Centre for Computational and Systems Biology
3643: 3028: 2910: 2631:"Unearthed genetic sequences from China market may point to animal origin of COVID-19" 2472: 1821: 4372: 4264: 4203: 3778: 3611: 3558: 3546: 3423: 3411: 3316: 3304: 3258: 3209: 3135: 3108: 3096: 3054: 3042: 2983: 2924: 2860: 2782: 2770: 2742: 2716: 2539: 2527: 2486: 2415: 2403: 2302: 2187: 1947: 1866: 1752: 1600: 1575: 1563: 1486: 1305: 1210: 1054: 998: 901: 816: 545: 221: 200: 3764: 3623: 2942: 2201: 1642: 1498: 1079:"Hochul Extends Mask Mandate, Debuts New Surge Plan as NY Smashes Case Record Again" 4244: 4208: 4016: 3601: 3593: 3538: 3401: 3296: 3248: 3240: 3199: 3191: 3088: 3032: 3024: 2914: 2906: 2762: 2517: 2476: 2468: 2393: 2175: 1937: 1878: 1856: 1817: 1764: 1744: 1688: 1605: 1555: 1476: 1468: 1295: 1200: 1192: 1044: 1036: 980: 966: 891: 883: 804: 797:"Critics decry access, transparency issues with key trove of coronavirus sequences" 301: 161: 3180:"Efficient compression of SARS-CoV-2 genome data using Nucleotide Archival Format" 872:"GISAID: Global initiative on sharing all influenza data – from vision to reality" 299:
The acronym GISAID was coined in a correspondence letter published in the journal
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viruses. The database was expanded to include the coronavirus responsible for the
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Bogner, Peter; Capua, Ilaria; Lipman, David J.; Cox, Nancy J. (August 30, 2006).
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International Federation of Pharmaceutical Manufacturers and Associations (IFPMA)
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Bernasconi, A; Canakoglu, A; Masseroli, M; Pinoli, P; Ceri, S (March 22, 2021).
1173:"Data, disease and diplomacy: GISAID's innovative contribution to global health" 3723: 3542: 3300: 3092: 2766: 2656:"WHO, advisors urge China to release all COVID-related data after new research" 2522: 2505: 2398: 2373: 2054:"GISAID Datenbank liefert grundlegende Informationen für Bekämpfungsstrategien" 1255:"Viral gene sequences to assist update diagnostics for swine influenza A(H1N1)" 1040: 763: 421: 2179: 840: 4332: 4316: 4198: 3794: 3139: 2864: 2720: 2506:"The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology" 1779: 1428:"70 years of GISRS – the Global Influenza Surveillance & Response System" 732:[Register of associations of the district court of Munich (Germany)] 592: 566: 378: 370: 333:
member states to share their virus genomes and put ownership rights at risk.
74: 3406: 2303:"One million coronavirus sequences: popular genome site hits mega milestone" 1609: 808: 744:(justice ministry of the German Land of Nordrhein-Westfalen). March 24, 2023 322:, because access to the most current genetic data for the highly pathogenic 4188: 4183: 4178: 3651: 3615: 3550: 3415: 3308: 3262: 3213: 3100: 3046: 2987: 2928: 2774: 2531: 2490: 2407: 1951: 1870: 1756: 1667:
Bogner, Peter; Capua, Ilaria; Lipman, David; Cox, Nancy (August 30, 2006).
1567: 1490: 1472: 1309: 1214: 1058: 905: 553:, which now classifies it as a "restricted access repository". In 2020 the 273: 132: 3244: 2796: 1892: 1457:"Influenza Virus Samples, International Law, and Global Health Diplomacy" 4259: 4193: 3812: 3774: 2897: 1109:"Coronavirus pandemic highlights key need for science and partnerships" 655:"District of Columbia Corporation Registry, Initial File Number 263748" 620: 385:
Some of the earliest SARS-CoV-2 genetic sequences were released by the
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profit at prices many poor nations cannot afford". In a 2022 piece in
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called the initiative "a game changer", while the co-director of the
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Phylogenetic Assignment of Named Global Outbreak Lineages (PANGOLIN)
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in August 2006, putting forward an initial aspiration of creating a
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and other news outlets, its open access status was revoked by the
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announced in November 2023 the establishment of GISAID Academy in
3862: 3808: 3756: 3738: 3692: 2743:"COVID-origins report sparks debate over major genome hub GISAID" 2374:"Omicron blindspots: why it's hard to track coronavirus variants" 740:. VR 204844 (in German). Munich, Germany: Ministerium der Justiz 512:
developing countries, either through high costs or by preventing
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Enserink, Martin (November 10, 2006). "Italy's Influenza Diva".
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Federal Ministry of Food, Agriculture and Consumer Protection
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African Society for Bioinformatics and Computational Biology
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Max Planck Institute of Molecular Cell Biology and Genetics
3790: 3656: 2457:"First shared SARS-CoV-2 genome: GISAID vs virological.org" 2116:"Dispute simmers over who first shared SARS-CoV-2's genome" 505: 401: 176: 1402:"Epidemiological update: Monkeypox multi-country outbreak" 1171:
Elbe, Stefan; Buckland-Merrett, Gemma (January 10, 2017).
999:"The WHO's chief scientist on a year of loss and learning" 1780:"Indonesia will add its data to global bird-flu Web site" 841:"Governance & Expertise: Scientific Advisory Council" 170: 167: 4067:
International Nucleotide Sequence Database Collaboration
3382:"New clues to pandemic's origin surface, causing uproar" 3010: 661: 2825:"The 'invented persona' behind a key pandemic database" 1596:"The 'invented persona' behind a key pandemic database" 919: 917: 915: 3680: 3572:
Elbe, Stefan; Buckland-Merrett, Gemma (January 2017).
3446:"A Major Clue to COVID's Origins Is Just Out of Reach" 2606:"A Major Clue to COVID's Origins Is Just Out of Reach" 2275: 2273: 2271: 2269: 2267: 2265: 2263: 329:
was often restricted, in part due to the hesitancy of
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Kryukov, K; Jin, L; Nakagawa, S (September 9, 2022).
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bioinformatics, and public health or animal-health..
790: 788: 786: 784: 179: 2260: 482: 164: 3759:, database of protein sequences grouping together 3177: 3001: 2887: 411: 3061: 2789: 1965:Armstrong Moore, Elizabeth (September 16, 2009). 1234:Center for Infectious Disease Research and Policy 1068: 926:"Inside the COVID Origins Raccoon Dog Cage Match" 781: 724: 722: 720: 387:Chinese Center for Disease Control and Prevention 270:Global Influenza Surveillance and Response System 193:Global Initiative on Sharing Avian Influenza Data 4314: 3994:US National Center for Biotechnology Information 3496:"Open letter: Support data sharing for COVID-19" 3331:"Open letter: Support data sharing for COVID-19" 2883: 2881: 2847: 2845: 1230:"Pandemic reveals strengths of new flu database" 551:Registry of Research Data Repositories (re3data) 278:OIE/FAO Network of Expertise on Animal Influenza 4079:International Society for Computational Biology 2935: 1964: 1669:"A global initiative on sharing avian flu data" 1662: 1660: 1594:Enserink, Martin; Cohen, Jon (April 19, 2023). 992: 990: 947:"A global initiative on sharing avian flu data" 647: 539:In 2017, GISAID's editorial board stated that " 189:Global Initiative on Sharing All Influenza Data 28:Global Initiative on Sharing All Influenza Data 4146:ISCB Africa ASBCB Conference on Bioinformatics 1710:"Poor countries may patent bird virus strains" 1635:"A Nonscientist Pushes Sharing Bird-Flu Data'" 717: 4093:Institute of Genomics and Integrative Biology 3708: 2878: 2842: 1967:"Launch of new flu database ruffles feathers" 1720: 1707: 1593: 1589: 1587: 1585: 1541: 1539: 756: 4122:European Conference on Computational Biology 2707:Safi, Michael; Block, Eli (March 28, 2023). 1657: 987: 693: 691: 689: 623: – Website for tracking viral evolution 4157:Research in Computational Molecular Biology 3520: 3278: 2853:"A critical genetic database is under fire" 996: 869: 697: 462:, with long-term funding being denied from 435:investigations of the origins of SARS-CoV-2 4134:International Conference on Bioinformatics 3715: 3701: 3685: 3124:"Socio‑technical Impediments of Open Data" 1628: 1626: 1582: 1536: 1227: 1221: 730:"Vereinsregister des Amtsgerichts München" 633: 34: 4378:Non-profit organisations based in Germany 4128:Intelligent Systems for Molecular Biology 3605: 3405: 3252: 3203: 3036: 2918: 2740: 2706: 2521: 2480: 2397: 1941: 1919: 1917: 1860: 1692: 1511: 1480: 1450: 1448: 1299: 1204: 1048: 997:Swaminathan, Soumya (December 17, 2020). 970: 895: 698:Greenemeier, Larry (September 14, 2009). 686: 641:District of Columbia Corporation Registry 2888:Keymanthri Moodley; et al. (2022). 2237: 2202:"GISAID - Submission Tracker Global RSV" 1777: 1545: 1132: 870:Shu, Y.; McCauley, J. (March 30, 2017). 235: 16:Global initiative for sharing virus data 4116:Basel Computational Biology Conference‎ 2503: 2428: 1632: 1623: 1166: 1164: 1162: 1160: 1158: 1156: 617: – SARS-CoV-2 lineage nomenclature 136:(co-chair, Scientific Advisory Council) 4363:International scientific organizations 4315: 3070: 2966: 2371: 2344: 2323:Press Trust of India (July 22, 2021). 2300: 1923: 1914: 1834: 1454: 1445: 1348: 1322: 1106: 1100: 1022: 794: 605:side blaming GISAID for that outcome. 377:, was to ensure the plausibility and 4073:International Society for Biocuration 3971:European Molecular Biology Laboratory 3696: 3379: 3274: 3272: 2819: 2817: 2555: 2454: 1807: 1633:Zamiska, Nicholas (August 30, 2006). 888:10.2807/1560-7917.ES.2017.22.13.30494 738:Gemeinsames Registerportal der Länder 392:In 2022, GISAID added Mpox virus and 4295: 2741:Mallapaty, Smriti (March 29, 2023). 2279: 2139: 1323:Larson, Christina (April 10, 2013). 1153: 923: 4099:Japanese Society for Bioinformatics 3444:Wu, Katherine J. (March 21, 2023). 2967:Lawson, Charles (October 7, 2016). 2604:Wu, Katherine J. (March 21, 2023). 1727:"Boosting access to disease data". 1375:Ng, Kang-chung (January 12, 2020). 795:Wadman, Meredith (March 10, 2021). 466:. In June 2023, it was reported in 13: 4061:European Molecular Biology network 3722: 3636: 3443: 3323: 3269: 3128:Electronic Journal of E-Government 2943:"GISAID Database Access Agreement" 2814: 2603: 2504:Munnink, Bas (September 9, 2021). 2345:Varela, Anna (November 16, 2021). 2108: 1926:"Flu database rocked by legal row" 1374: 1228:Schnirring, Lisa (June 25, 2009). 14: 4389: 4151:Pacific Symposium on Biocomputing 4055:Australia Bioinformatics Resource 4022:Swiss Institute of Bioinformatics 4005:Netherlands Bioinformatics Centre 3965:European Bioinformatics Institute 3672: 2429:Sweeney, Lucy (January 8, 2023). 2372:Maxmen, Amy (December 16, 2021). 2140:Ryan, Valerie (August 10, 2020). 1708:John Lauerman (August 25, 2006). 1455:Fidler, David P. (January 2008). 1023:Korber, Bette (August 20, 2020). 563:European Bioinformatics Institute 339:Swiss Institute of Bioinformatics 314:and the Creative Commons project 4294: 4283: 4282: 3953:Database Center for Life Science 3941:Computational Biology Department 3829:Arabidopsis Information Resource 2556:Cocks, Tim (November 30, 2021). 2063:. April 16, 2014. Archived from 1998:. April 15, 2010. Archived from 1835:Butler, Declan (December 2007). 1778:McDowell, Robin (May 18, 2008). 1133:McDowell, Robin (May 15, 2008). 1107:Jameel, Shahid (April 2, 2020). 924:Eban, Katherine (June 1, 2023). 581:. Furthermore, the article from 483:Access and intellectual property 420:In January 2020, the SARS-CoV-2 160: 3799:Specialised genomic databases: 3565: 3514: 3488: 3463: 3437: 3373: 3348: 3220: 3171: 3153: 3115: 2960: 2734: 2700: 2674: 2648: 2623: 2597: 2572: 2549: 2497: 2448: 2422: 2365: 2338: 2316: 2294: 2219: 2194: 2159: 2133: 2082: 2046: 2014: 1984: 1958: 1893:"Global flu database goes live" 1885: 1828: 1801: 1771: 1701: 1505: 1420: 1394: 1368: 1349:Prasad, R. (January 19, 2020). 1342: 1316: 1276: 1247: 1126: 1016: 938: 412:Database for SARS-CoV-2 genomes 348: 244:(l) and German State Secretary 4348:Influenza A virus subtype H5N1 4000:Japanese Institute of Genetics 2301:Maxmen, Amy (April 23, 2021). 1837:"Q&A: Siti Fadilah Supari" 1810:The Lancet Infectious Diseases 1735:(7106): 957. August 31, 2006. 863: 833: 292:, who was then leading the US 1: 4353:Organisations based in Munich 3920:Rosalind (education platform) 3837:Zebrafish Information Network 3805:Saccharomyces Genome Database 3029:10.1016/S2214-109X(22)00417-X 2911:10.1016/S2214-109X(22)00417-X 2473:10.1016/S2666-5247(23)00133-7 1822:10.1016/S1473-3099(06)70589-8 1294:(7446): 397. April 24, 2013. 627: 440: 4250:List of biological databases 3769:Protein Information Resource 3196:10.1016/j.patter.2022.100562 2435:Australian Broadcasting Corp 2280:Nuki, Paul (June 13, 2023). 1560:10.1126/science.314.5801.918 1512:Editorial (March 15, 2006). 1461:Emerging Infectious Diseases 1284:"The fight against bird flu" 764:"GISAID - Imprint / Privacy" 375:Friedrich Loeffler Institute 7: 4358:Public health organizations 3743:European Nucleotide Archive 3380:Cohen, J (March 24, 2023). 3233:Briefings in Bioinformatics 2976:Journal of Law and Medicine 2455:Burki, Talha (April 2023). 2096:(in German). March 17, 2022 608: 394:Respiratory syncytial virus 355:Federal Republic of Germany 294:Centers for Disease Control 10: 4394: 3543:10.1038/d41586-021-00305-7 3301:10.1038/d41586-021-00305-7 3093:10.1038/d41586-021-01194-6 2767:10.1038/d41586-023-00901-9 2523:10.1038/s41591-021-01472-w 2399:10.1038/d41586-021-03698-7 2353:. Georgia State University 1514:"Secret Avian Flu Archive" 1041:10.1016/j.cell.2020.06.043 448:public health laboratories 427:SARS-CoV-2 Omicron variant 231: 4278: 4232: 4166: 4108: 4041: 4028:Wellcome Sanger Institute 3982:J. Craig Venter Institute 3928: 3906: 3845: 3730: 3500:www.covid19dataportal.org 3335:www.covid19dataportal.org 3184:Patterns (New York, N.Y.) 3017:The Lancet. Global Health 2180:10.1101/2023.02.03.526935 2029:World Health Organization 1902:. May 16, 2008. p. 1 1432:World Health Organisation 1262:World Health Organization 555:World Health Organization 452:WHO Collaborating Centres 331:World Health Organization 263: 143: 128:(executive board members) 106: 98: 84: 70: 60: 42: 33: 26: 4011:Philippine Genome Center 2467:(6): S2666524723001337. 1381:South China Morning Post 541:re3data.org and DataCite 4255:Molecular phylogenetics 3751:China National GeneBank 3644:"Not a Perfect Science" 3407:10.1126/science.adh9055 2250:Science & Diplomacy 1924:Butler, Declan (2009). 1639:The Wall Street Journal 1610:10.1126/science.adi3224 1113:The Telegraph (Kolkata) 809:10.1126/science.abi4496 226:2022–2023 mpox outbreak 3959:DNA Data Bank of Japan 3747:DNA Data Bank of Japan 3502:. COVID-19 Data Portal 3471:"GISAID | re3data.org" 1473:10.3201/eid1401.070700 1329:Bloomberg BusinessWeek 460:Rockefeller Foundation 260: 217:epidemic in 2013, the 65:Nonprofit organization 48:; 17 years ago 46:December 19, 2006 4240:Computational biology 3755:Secondary databases: 2797:"GISAID - Governance" 2584:MIT Technology Review 2174:: 2023.02.03.526935. 239: 3737:Sequence databases: 2233:. November 29, 2023. 600:into claims made by 518:Human Genome Project 489:developing countries 102:Donations and grants 4033:Whitehead Institute 3821:Rat Genome Database 3590:2017GloCh...1...33E 3535:2021Natur.590..195V 3398:2023Sci...379.1175C 3392:(6638): 1175–1176. 3293:2021Natur.590..195V 3245:10.1093/bib/bbaa359 3085:2021Natur.593..176M 3023:(12): e1855–e1859. 2905:(12): e1855–e1859. 2759:2023Natur.616...13M 2390:2021Natur.600..579M 2146:Irish Medical Times 1853:2007Natur.450.1137B 1741:2006Natur.442Q.957. 1685:2006Natur.442Q.981B 1189:2017GloCh...1...33E 1085:. December 31, 2021 963:2006Natur.442Q.981B 742:Nordrhein-Westfalen 704:Scientific American 514:technology transfer 493:Scientific American 456:European Commission 23: 4270:Sequence alignment 3977:Flatiron Institute 2461:The Lancet Microbe 2252:– via AAAS. 2070:on January 3, 2017 2002:on January 3, 2017 1518:The New York Times 1406:www.ecdc.europa.eu 1141:. Associated Press 1035:(4): 812–827.e19. 673:opencorporates.com 559:Soumya Swaminathan 522:an open data model 398:Ministry of Health 261: 148:https://gisaid.org 21: 4338:COVID-19 pandemic 4310: 4309: 4265:Sequence database 3779:Protein Data Bank 3773:Other databases: 3598:10.1002/gch2.1018 3578:Global Challenges 3529:(7845): 195–196. 3287:(7845): 195–196. 3079:(7858): 176–177. 1645:on March 27, 2023 1554:(5801): 918–919. 1197:10.1002/gch2.1018 1177:Global Challenges 240:GISAID President 201:COVID-19 pandemic 191:, previously the 153: 152: 126:Christoph Wetzler 4385: 4343:Genome databases 4298: 4297: 4286: 4285: 4245:List of biobanks 4209:Stockholm format 4017:Scripps Research 3717: 3710: 3703: 3694: 3693: 3689: 3684: 3683: 3681:Official website 3668: 3666: 3664: 3648: 3631: 3630: 3609: 3569: 3563: 3562: 3518: 3512: 3511: 3509: 3507: 3492: 3486: 3485: 3483: 3481: 3467: 3461: 3460: 3458: 3456: 3441: 3435: 3434: 3432: 3430: 3409: 3377: 3371: 3370: 3368: 3366: 3352: 3346: 3345: 3343: 3341: 3327: 3321: 3320: 3276: 3267: 3266: 3256: 3224: 3218: 3217: 3207: 3175: 3169: 3168: 3157: 3151: 3150: 3148: 3146: 3119: 3113: 3112: 3068: 3059: 3058: 3040: 3008: 2999: 2998: 2996: 2994: 2973: 2964: 2958: 2957: 2955: 2953: 2939: 2933: 2932: 2922: 2894: 2885: 2876: 2875: 2873: 2871: 2849: 2840: 2839: 2837: 2835: 2821: 2812: 2811: 2809: 2807: 2793: 2787: 2786: 2738: 2732: 2731: 2729: 2727: 2704: 2698: 2697: 2695: 2693: 2688:. March 17, 2023 2678: 2672: 2671: 2669: 2667: 2662:. March 19, 2023 2652: 2646: 2645: 2643: 2641: 2627: 2621: 2620: 2618: 2616: 2601: 2595: 2594: 2592: 2590: 2576: 2570: 2569: 2567: 2565: 2553: 2547: 2546: 2525: 2516:(9): 1518–1524. 2501: 2495: 2494: 2484: 2452: 2446: 2445: 2443: 2441: 2426: 2420: 2419: 2401: 2369: 2363: 2362: 2360: 2358: 2342: 2336: 2335: 2320: 2314: 2313: 2298: 2292: 2291: 2277: 2258: 2257: 2241: 2235: 2234: 2223: 2217: 2216: 2214: 2212: 2198: 2192: 2191: 2163: 2157: 2156: 2154: 2152: 2137: 2131: 2130: 2128: 2126: 2112: 2106: 2105: 2103: 2101: 2086: 2080: 2079: 2077: 2075: 2069: 2058: 2050: 2044: 2043: 2041: 2039: 2026: 2018: 2012: 2011: 2009: 2007: 1988: 1982: 1981: 1979: 1977: 1962: 1956: 1955: 1945: 1921: 1912: 1911: 1909: 1907: 1897: 1889: 1883: 1882: 1864: 1862:10.1038/4501137a 1832: 1826: 1825: 1805: 1799: 1798: 1792: 1790: 1784:Orlando Sentinel 1775: 1769: 1768: 1724: 1718: 1717: 1705: 1699: 1698: 1696: 1664: 1655: 1654: 1652: 1650: 1641:. Archived from 1630: 1621: 1620: 1618: 1616: 1591: 1580: 1579: 1543: 1534: 1533: 1531: 1529: 1524:on April 4, 2023 1520:. Archived from 1509: 1503: 1502: 1484: 1452: 1443: 1442: 1440: 1438: 1424: 1418: 1417: 1415: 1413: 1398: 1392: 1391: 1389: 1387: 1372: 1366: 1365: 1363: 1361: 1346: 1340: 1339: 1337: 1335: 1320: 1314: 1313: 1303: 1280: 1274: 1273: 1271: 1269: 1264:. April 25, 2009 1259: 1251: 1245: 1244: 1242: 1240: 1225: 1219: 1218: 1208: 1168: 1151: 1150: 1148: 1146: 1130: 1124: 1123: 1121: 1119: 1104: 1098: 1097: 1092: 1090: 1075: 1066: 1065: 1052: 1020: 1014: 1013: 1011: 1009: 994: 985: 984: 974: 942: 936: 935: 921: 910: 909: 899: 867: 861: 860: 854: 852: 837: 831: 830: 825: 823: 792: 779: 778: 776: 774: 760: 754: 753: 751: 749: 735: 726: 715: 714: 712: 710: 695: 684: 683: 681: 679: 665: 659: 658: 651: 645: 644: 637: 557:chief scientist 422:genetic sequence 254: 186: 185: 182: 181: 178: 175: 172: 169: 166: 135: 127: 123: 56: 54: 49: 38: 24: 20: 4393: 4392: 4388: 4387: 4386: 4384: 4383: 4382: 4323:Avian influenza 4313: 4312: 4311: 4306: 4274: 4228: 4162: 4104: 4085:Student Council 4037: 3936:Broad Institute 3924: 3902: 3841: 3726: 3721: 3679: 3678: 3675: 3662: 3660: 3646: 3642: 3639: 3637:Further reading 3634: 3570: 3566: 3519: 3515: 3505: 3503: 3494: 3493: 3489: 3479: 3477: 3475:www.re3data.org 3469: 3468: 3464: 3454: 3452: 3442: 3438: 3428: 3426: 3378: 3374: 3364: 3362: 3354: 3353: 3349: 3339: 3337: 3329: 3328: 3324: 3277: 3270: 3225: 3221: 3176: 3172: 3159: 3158: 3154: 3144: 3142: 3120: 3116: 3069: 3062: 3009: 3002: 2992: 2990: 2971: 2965: 2961: 2951: 2949: 2941: 2940: 2936: 2892: 2886: 2879: 2869: 2867: 2851: 2850: 2843: 2833: 2831: 2829:www.science.org 2823: 2822: 2815: 2805: 2803: 2795: 2794: 2790: 2753:(7955): 13–14. 2739: 2735: 2725: 2723: 2705: 2701: 2691: 2689: 2686:www.cbsnews.com 2680: 2679: 2675: 2665: 2663: 2654: 2653: 2649: 2639: 2637: 2635:www.science.org 2629: 2628: 2624: 2614: 2612: 2602: 2598: 2588: 2586: 2578: 2577: 2573: 2563: 2561: 2554: 2550: 2510:Nature Medicine 2502: 2498: 2453: 2449: 2439: 2437: 2427: 2423: 2370: 2366: 2356: 2354: 2343: 2339: 2321: 2317: 2299: 2295: 2278: 2261: 2242: 2238: 2225: 2224: 2220: 2210: 2208: 2200: 2199: 2195: 2164: 2160: 2150: 2148: 2138: 2134: 2124: 2122: 2120:www.science.org 2114: 2113: 2109: 2099: 2097: 2088: 2087: 2083: 2073: 2071: 2067: 2056: 2052: 2051: 2047: 2037: 2035: 2024: 2020: 2019: 2015: 2005: 2003: 1990: 1989: 1985: 1975: 1973: 1963: 1959: 1943:10.1038/460786b 1922: 1915: 1905: 1903: 1895: 1891: 1890: 1886: 1833: 1829: 1806: 1802: 1788: 1786: 1776: 1772: 1749:10.1038/442957a 1726: 1725: 1721: 1706: 1702: 1694:10.1038/442981a 1665: 1658: 1648: 1646: 1631: 1624: 1614: 1612: 1592: 1583: 1544: 1537: 1527: 1525: 1510: 1506: 1453: 1446: 1436: 1434: 1426: 1425: 1421: 1411: 1409: 1400: 1399: 1395: 1385: 1383: 1373: 1369: 1359: 1357: 1347: 1343: 1333: 1331: 1321: 1317: 1301:10.1038/496397a 1282: 1281: 1277: 1267: 1265: 1257: 1253: 1252: 1248: 1238: 1236: 1226: 1222: 1169: 1154: 1144: 1142: 1131: 1127: 1117: 1115: 1105: 1101: 1088: 1086: 1077: 1076: 1069: 1021: 1017: 1007: 1005: 995: 988: 972:10.1038/442981a 943: 939: 922: 913: 868: 864: 850: 848: 839: 838: 834: 821: 819: 793: 782: 772: 770: 762: 761: 757: 747: 745: 733: 728: 727: 718: 708: 706: 696: 687: 677: 675: 667: 666: 662: 653: 652: 648: 639: 638: 634: 630: 611: 485: 443: 414: 351: 320:Nobel laureates 316:Science Commons 266: 248: 234: 163: 159: 139: 131: 125: 121: 109: 52: 50: 47: 29: 17: 12: 11: 5: 4391: 4381: 4380: 4375: 4370: 4368:Bioinformatics 4365: 4360: 4355: 4350: 4345: 4340: 4335: 4330: 4325: 4308: 4307: 4305: 4304: 4292: 4279: 4276: 4275: 4273: 4272: 4267: 4262: 4257: 4252: 4247: 4242: 4236: 4234: 4233:Related topics 4230: 4229: 4227: 4226: 4221: 4216: 4211: 4206: 4201: 4196: 4191: 4186: 4181: 4176: 4170: 4168: 4164: 4163: 4161: 4160: 4154: 4148: 4143: 4137: 4131: 4125: 4119: 4112: 4110: 4106: 4105: 4103: 4102: 4096: 4090: 4089: 4088: 4076: 4070: 4064: 4058: 4052: 4045: 4043: 4039: 4038: 4036: 4035: 4030: 4025: 4019: 4014: 4008: 4002: 3997: 3991: 3985: 3979: 3974: 3968: 3962: 3956: 3950: 3944: 3938: 3932: 3930: 3926: 3925: 3923: 3922: 3917: 3910: 3908: 3904: 3903: 3901: 3900: 3895: 3890: 3885: 3880: 3875: 3870: 3865: 3860: 3855: 3849: 3847: 3843: 3842: 3840: 3839: 3797: 3771: 3753: 3734: 3732: 3728: 3727: 3724:Bioinformatics 3720: 3719: 3712: 3705: 3697: 3691: 3690: 3674: 3673:External links 3671: 3670: 3669: 3659:. May 28, 2021 3638: 3635: 3633: 3632: 3564: 3513: 3487: 3462: 3436: 3372: 3347: 3322: 3268: 3239:(2): 664–675. 3219: 3170: 3161:"GISAID - FAQ" 3152: 3134:(2): 156–172. 3114: 3060: 3000: 2959: 2947:www.gisaid.org 2934: 2877: 2841: 2813: 2788: 2733: 2699: 2673: 2647: 2622: 2596: 2571: 2548: 2496: 2447: 2421: 2364: 2337: 2315: 2293: 2259: 2236: 2218: 2193: 2158: 2132: 2107: 2081: 2045: 2013: 1983: 1957: 1913: 1884: 1847:(7173): 1137. 1827: 1800: 1770: 1719: 1714:Bloomberg News 1700: 1656: 1622: 1581: 1535: 1504: 1444: 1419: 1408:. June 9, 2022 1393: 1367: 1341: 1315: 1275: 1246: 1220: 1152: 1125: 1099: 1067: 1015: 986: 937: 911: 862: 832: 780: 755: 716: 685: 660: 646: 631: 629: 626: 625: 624: 618: 610: 607: 534:open databases 484: 481: 442: 439: 413: 410: 350: 347: 327:zoonotic virus 265: 262: 233: 230: 151: 150: 145: 141: 140: 138: 137: 129: 119: 112: 110: 107: 104: 103: 100: 96: 95: 86: 82: 81: 72: 68: 67: 62: 58: 57: 44: 40: 39: 31: 30: 27: 15: 9: 6: 4: 3: 2: 4390: 4379: 4376: 4374: 4371: 4369: 4366: 4364: 4361: 4359: 4356: 4354: 4351: 4349: 4346: 4344: 4341: 4339: 4336: 4334: 4331: 4329: 4326: 4324: 4321: 4320: 4318: 4303: 4302: 4293: 4291: 4290: 4281: 4280: 4277: 4271: 4268: 4266: 4263: 4261: 4258: 4256: 4253: 4251: 4248: 4246: 4243: 4241: 4238: 4237: 4235: 4231: 4225: 4222: 4220: 4217: 4215: 4212: 4210: 4207: 4205: 4202: 4200: 4199:Pileup format 4197: 4195: 4192: 4190: 4187: 4185: 4182: 4180: 4177: 4175: 4172: 4171: 4169: 4165: 4158: 4155: 4152: 4149: 4147: 4144: 4141: 4138: 4135: 4132: 4129: 4126: 4123: 4120: 4117: 4114: 4113: 4111: 4107: 4100: 4097: 4094: 4091: 4086: 4083: 4082: 4080: 4077: 4074: 4071: 4068: 4065: 4062: 4059: 4056: 4053: 4050: 4047: 4046: 4044: 4042:Organizations 4040: 4034: 4031: 4029: 4026: 4023: 4020: 4018: 4015: 4012: 4009: 4006: 4003: 4001: 3998: 3995: 3992: 3989: 3986: 3983: 3980: 3978: 3975: 3972: 3969: 3966: 3963: 3960: 3957: 3954: 3951: 3948: 3945: 3942: 3939: 3937: 3934: 3933: 3931: 3927: 3921: 3918: 3916: 3912: 3911: 3909: 3905: 3899: 3896: 3894: 3891: 3889: 3886: 3884: 3881: 3879: 3876: 3874: 3871: 3869: 3866: 3864: 3861: 3859: 3856: 3854: 3851: 3850: 3848: 3844: 3838: 3834: 3830: 3826: 3822: 3818: 3814: 3810: 3806: 3802: 3798: 3796: 3795:Gene Ontology 3792: 3788: 3784: 3780: 3776: 3772: 3770: 3766: 3762: 3758: 3754: 3752: 3748: 3744: 3740: 3736: 3735: 3733: 3729: 3725: 3718: 3713: 3711: 3706: 3704: 3699: 3698: 3695: 3688: 3682: 3677: 3676: 3658: 3654: 3653: 3645: 3641: 3640: 3629: 3625: 3621: 3617: 3613: 3608: 3603: 3599: 3595: 3591: 3587: 3583: 3579: 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Index


Nonprofit organization
Global health
research
Munich
Germany
Peter Bogner
Ron Fouchier
https://gisaid.org
/ˈɡɪsd/
influenza
COVID-19 pandemic
H1N1
pandemic
H7N9
COVID-19
pandemic
2022–2023 mpox outbreak
Peter Bogner shakes hands with Robert Kloos
Peter Bogner
Robert Kloos
de
Berlin
Global Influenza Surveillance and Response System
Ilaria Capua
OIE/FAO Network of Expertise on Animal Influenza
Peter Bogner
Nancy Cox
Centers for Disease Control
Nature

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