Knowledge

MvirDB

Source šŸ“

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could be obtained from the usage of the provided browser tool. Once the browser tool was used, the results were returned as a readable table that was organized by ascending E-Values, each of which were hyperlinked to their related page. MvirDB was implemented in an
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Attwood, Teresa K.; Bradley, Paul M.; Gaulton, Anna; Maudling, Neil; Mitchell, Alexander L.; Moulton, Georgina (2005-04-15), "The PRINTS protein fingerprint database: functional and evolutionary applications",
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Srinivasan, K.N.; Gopalakrishnakone, P.; Tan, P.T.; Chew, K.C.; Cheng, B.; Kini, R.M.; Koh, J.L.Y.; Seah, S.H.; Brusic, V. (January 2002). "SCORPION, a molecular database of scorpion toxins".
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Jungo, Florence; Bairoch, Amos (March 2005). "Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase".
484:"Islander: a database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities" 211:"MvirDB--a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications" 173:
relational database. MvirDB appears to have been inactive for some time, and is therefore not current. The last available
410: 668: 174: 541:"Antibiotic Resistance Genes Online (ARGO): A Database on vancomycin and b-lactam resistance genes" 137: 153: 8: 598:
Yeats, C.; Lees, J.; Reid, A.; Kellam, P.; Martin, N.; Liu, X.; Orengo, C. (2007-12-23).
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Zhou, C. E.; Smith, J.; Lam, M.; Zemla, A.; Dyer, M. D.; Slezak, T. (2007-01-03).
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Scaria, Joy; Chandramouli, Umamaheswaran; Verma, Sanjay Kumar (2005-02-01).
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information included: Tox-Prot, SCORPION, the PRINTS Virulence Factors,
600:"Gene3D: comprehensive structural and functional annotation of genomes" 33:
A database of toxins, virulence factors and antibiotic resistance genes
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Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics
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tool that allowed the user to query their sequence against all
391: 129: 427:"VFDB: a reference database for bacterial virulence factors" 149: 152:, TVFac, Islander, ARGO and VIDA. The database provided a 88: 157: 141: 43:
Toxins, Virulence Factors and Antibiotic resistance genes
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Journal of Molecular Microbiology and Biotechnology
208: 655: 265: 140:genes. Sources that this database used for 633: 615: 574: 556: 515: 458: 368: 242: 664:Antimicrobial resistance organizations 656: 481: 424: 204: 202: 164:sequences in MvirDB. Information on 353:"Author Index Vol. 15, No. 1, 2008" 13: 187:Antimicrobial Resistance databases 14: 680: 199: 591: 532: 475: 418: 397:, John Wiley & Sons, Ltd, 385: 345: 302: 259: 1: 437:(Database issue): D325ā€“D328. 323:10.1016/s0041-0101(01)00182-9 280:10.1016/j.toxicon.2004.10.018 192: 177:was made on August 2, 2017. 7: 180: 128:that stored information on 10: 685: 403:10.1002/047001153x.g306301 482:Mantri, Y. (2004-01-01). 124:was a publicly available 104: 99: 83: 78: 64: 59: 47: 37: 29: 24: 610:(Database): D414ā€“D418. 425:Chen, L. (2004-12-17). 221:(Database): D391ā€“D394. 604:Nucleic Acids Research 558:10.6026/97320630001005 488:Nucleic Acids Research 431:Nucleic Acids Research 215:Nucleic Acids Research 138:antibiotic resistance 669:Biological databases 617:10.1093/nar/gkm1019 21: 16:Biological database 500:10.1093/nar/gkh059 443:10.1093/nar/gki008 227:10.1093/nar/gkl791 19: 494:(90001): 55Dā€“58. 370:10.1159/000121450 166:virulence factors 134:virulence factors 118:molecular biology 114: 113: 676: 648: 647: 637: 619: 595: 589: 588: 578: 560: 536: 530: 529: 519: 479: 473: 472: 462: 422: 416: 415: 389: 383: 382: 372: 349: 343: 342: 306: 300: 299: 263: 257: 256: 246: 206: 95: 92: 90: 65:Primary citation 22: 18: 684: 683: 679: 678: 677: 675: 674: 673: 654: 653: 652: 651: 596: 592: 537: 533: 480: 476: 423: 419: 413: 390: 386: 363:(1): 65. 2008. 351: 350: 346: 307: 303: 264: 260: 207: 200: 195: 183: 106: 87: 39: 17: 12: 11: 5: 682: 672: 671: 666: 650: 649: 590: 545:Bioinformation 531: 474: 417: 411: 384: 344: 301: 274:(3): 293ā€“301. 258: 197: 196: 194: 191: 190: 189: 182: 179: 112: 111: 108: 102: 101: 97: 96: 85: 81: 80: 76: 75: 66: 62: 61: 57: 56: 51: 45: 44: 41: 35: 34: 31: 27: 26: 15: 9: 6: 4: 3: 2: 681: 670: 667: 665: 662: 661: 659: 645: 641: 636: 631: 627: 623: 618: 613: 609: 605: 601: 594: 586: 582: 577: 572: 568: 564: 559: 554: 550: 546: 542: 535: 527: 523: 518: 513: 509: 505: 501: 497: 493: 489: 485: 478: 470: 466: 461: 456: 452: 448: 444: 440: 436: 432: 428: 421: 414: 408: 404: 400: 396: 388: 380: 376: 371: 366: 362: 358: 354: 348: 340: 336: 332: 328: 324: 320: 316: 312: 305: 297: 293: 289: 285: 281: 277: 273: 269: 262: 254: 250: 245: 240: 236: 232: 228: 224: 220: 216: 212: 205: 203: 198: 188: 185: 184: 178: 176: 172: 167: 163: 159: 155: 151: 147: 143: 139: 135: 131: 127: 123: 119: 109: 103: 100:Miscellaneous 98: 94: 86: 82: 77: 74: 70: 67: 63: 58: 55: 52: 50: 46: 42: 36: 32: 28: 23: 607: 603: 593: 548: 544: 534: 491: 487: 477: 434: 430: 420: 394: 387: 360: 356: 347: 317:(1): 23ā€“31. 314: 310: 304: 271: 267: 261: 218: 214: 121: 115: 105:Bookmarkable 30:Description 658:Categories 551:(1): 5ā€“7. 412:047001153X 193:References 171:Oracle 10g 38:Data types 626:0305-1048 567:0973-8894 508:1362-4962 451:1362-4962 379:1464-1801 331:0041-0101 288:0041-0101 235:0305-1048 49:Organisms 644:18032434 585:17597841 526:14681358 469:15608208 339:11602275 296:15683867 253:17090593 181:See also 175:snapshot 126:database 107:entities 73:17090593 54:Bacteria 40:captured 635:2238970 576:1891619 311:Toxicon 268:Toxicon 244:1669772 162:protein 146:protein 84:Website 60:Contact 25:Content 642:  632:  624:  583:  573:  565:  524:  517:308793 514:  506:  467:  460:539962 457:  449:  409:  377:  337:  329:  294:  286:  251:  241:  233:  130:toxins 122:MvirDB 89:mvirdb 79:Access 71:  20:MvirDB 154:BLAST 91:.llnl 640:PMID 622:ISSN 581:PMID 563:ISSN 522:PMID 504:ISSN 465:PMID 447:ISSN 407:ISBN 375:ISSN 335:PMID 327:ISSN 292:PMID 284:ISSN 249:PMID 231:ISSN 160:and 150:VFDB 144:and 136:and 93:.gov 69:PMID 630:PMC 612:doi 571:PMC 553:doi 512:PMC 496:doi 455:PMC 439:doi 399:doi 365:doi 319:doi 276:doi 239:PMC 223:doi 158:DNA 142:DNA 116:In 110:yes 660:: 638:. 628:. 620:. 608:36 606:. 602:. 579:. 569:. 561:. 547:. 543:. 520:. 510:. 502:. 492:32 490:. 486:. 463:. 453:. 445:. 435:33 433:. 429:. 405:, 373:. 361:15 359:. 355:. 333:. 325:. 315:40 313:. 290:. 282:. 272:45 270:. 247:. 237:. 229:. 219:35 217:. 213:. 201:^ 132:, 120:, 646:. 614:: 587:. 555:: 549:1 528:. 498:: 471:. 441:: 401:: 381:. 367:: 341:. 321:: 298:. 278:: 255:. 225::

Index

Organisms
Bacteria
PMID
17090593
mvirdb.llnl.gov
molecular biology
database
toxins
virulence factors
antibiotic resistance
DNA
protein
VFDB
BLAST
DNA
protein
virulence factors
Oracle 10g
snapshot
Antimicrobial Resistance databases


"MvirDB--a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications"
doi
10.1093/nar/gkl791
ISSN
0305-1048
PMC
1669772
PMID

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