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385:, GC-MS and LC/MS spectra from more than 1,100 different metabolites. The clinical information includes data on >10,000 metabolite-biofluid concentrations, metabolite concentration information on more than 600 different human diseases and pathway data for more than 200 different inborn errors of metabolism. The biochemical information includes nearly 6,000 protein (and DNA) sequences and more than 5,000 biochemical reactions that are linked to these metabolite entries. The HMDB supports a wide variety of online queries including text searches, chemical structure searches, sequence similarity searches and spectral similarity searches. This makes it particularly useful for metabolomic researchers who are attempting to identify or understand metabolites in clinical metabolomic studies. The first version of the HMDB was released in Jan. 1 2007 and was compiled by scientists at the 237:. Because each chemical compound has a different chemical structure, each compound will have a unique (or almost unique) NMR spectrum. As a result, NMR is particularly useful for the characterization, identification and quantification of small molecules, such as metabolites. The widespread use of NMR for "classical" metabolic studies, along with its exceptional capacity to handle complex metabolite mixtures is likely the reason why NMR was one of the first technologies to be widely adopted for routine metabolome measurements. As an analytical technique, NMR is non-destructive, non-biased, easily quantifiable, requires little or no separation, permits the identification of novel compounds and it needs no chemical derivatization. NMR is particularly amenable to detecting compounds that are less tractable to 261:) or blasting them with a laser when they are placed on specially coated plates (matrix assisted laser desorption ionization). The charged molecules are then propelled through space using electrodes or magnets and their speed, rate of curvature, or other physical characteristics are measured to determine their mass-to-charge ratio. From these data the mass of the parent molecule can be determined. Further fragmentation of the molecule through controlled collisions with gas molecules or with electrons can help determine the structure of molecules. Very accurate mass measurements can also be used to determine the elemental formulas or elemental composition of compounds. Most forms of mass spectrometry require some form of separation using 486:
different metabolites. The biochemical information includes >1,600 protein (and DNA) sequences and >3,100 biochemical reactions that are linked to these metabolite entries. The ECMDB supports many different types of online queries including text searches, chemical structure searches, sequence similarity searches and spectral similarity searches. This makes it particularly useful for metabolomic researchers who are studying E. coli as a model organism.
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different metabolites. The biochemical information in YMDB includes >1,100 protein (and DNA) sequences and >900 biochemical reactions. The YMDB supports a wide variety of queries including text searches, chemical structure searches, sequence similarity searches and spectral similarity searches. This makes it particularly useful for metabolomic researchers who are studying yeast as a model organism or who are looking into optimizing the production of
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different organs and biofluids associated with those organs and tissues can also have distinctly different metabolomes. The fact that different organisms and different tissues/biofluids have such different metabolomes has led to the development of a number of organism-specific and biofluid-specific metabolome databases. Some of the better known metabolome databases include the
354:. Metabolome databases can be distinguished from metabolite databases in that metabolite databases contain lightly annotated or synoptic metabolite data from multiple organisms while metabolome databases contain richly detailed and heavily referenced chemical, pathway, spectral and metabolite concentration data for specific organisms. 233:) at which a given atom or nucleus absorbs is highly dependent on the chemical environment (bonding, chemical structure nearest neighbours, solvent) of that atom in a given molecule. The NMR absorption patterns produce "resonance" peaks at different frequencies or different chemical shifts – this collection of peaks is called an 218:(CE) to facilitate compound separation. Each method is typically able to identify or characterize 50-5,000 different metabolites or metabolite "features" at a time, depending on the instrument or protocol being used. Currently it is not possible to analyze the entire range of metabolites by a single analytical method. 393:. At that time, they reported data on 2,500 metabolites, 1,200 drugs and 3,500 food components. Since then these scientists have greatly expanded the collection. The version 3.5 of the HMDB contains >16,000 endogenous metabolites, >1,500 drugs and >22,000 food constituents or food metabolites. 313:
Because an organism's metabolome is largely defined by its genome, different species will have different metabolomes. Indeed, the fact that the metabolome of a tomato is different from the metabolome of an apple is the reason why these two fruits taste so different. Furthermore, different tissues,
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Scientists at the University of Alberta have been systematically characterizing specific biofluid metabolomes including the serum metabolome, the urine metabolome, the cerebrospinal fluid (CSF) metabolome and the saliva metabolome. These efforts have involved both experimental metabolomic analysis
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separation (this is particularly true for GC-MS). As an analytical technique, MS is a very sensitive method that requires very little sample (<1 ng of material or <10 μL of a biofluid) and can generate signals for thousands of metabolites from a single sample. MS instruments can also be
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The chemical information in YMDB includes 2,027 metabolite structures with detailed metabolite descriptions, extensive chemical classifications, synthesis information and observed/calculated chemical properties. It also contains nearly 4,000 NMR, GC-MS and LC/MS spectra obtained from more than 500
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The chemical information includes more than 2,700 metabolite structures with detailed metabolite descriptions, extensive chemical classifications, synthesis information and observed/calculated chemical properties. It also contains nearly 5,000 NMR, GC-MS and LC-MS spectra from more than 600
305:, the metabolome is a highly dynamic entity that can change dramatically, over a period of just seconds or minutes. As a result, there is growing interest in measuring metabolites over multiple time periods or over short time intervals using modified versions of NMR or MS-based metabolomics. 410:
assays) as well as extensive literature mining. According to their data, the human serum metabolome contains at least 4,200 different compounds (including many lipids), the human urine metabolome contains at least 3,000 different compounds (including hundreds of volatiles and gut microbial
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configured for very high throughput metabolome analyses (hundreds to thousands of samples a day). Quantification of metabolites and the characterization of novel compound structures is more difficult by MS than by NMR. LC-MS is particularly amenable to detecting hydrophobic molecules (
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SESI-HRMS is a non-invasive analytical technique that allows us to monitor the yeast metabolic activities. SESI-HRMS has found around 300 metabolites in the yeast fermentation process, this suggests that a large number of glucose metabolites are not reported in the literature.
170:". It was constructed to imply that metabolites are indirectly encoded by genes or act on genes and gene products. The term "metabolome" was first used in 1998 and was likely coined to match with existing biological terms referring to the complete set of genes (the 269:. This separation step is required to simplify the resulting mass spectra and to permit more accurate compound identification. Some mass spectrometry methods also require that the molecules be derivatized or chemically modified so that they are more amenable for 144:
In other words, there is both an endogenous metabolome and an exogenous metabolome. The endogenous metabolome can be further subdivided to include a "primary" and a "secondary" metabolome (particularly when referring to plant or microbial metabolomes). A
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is not directly involved in those processes, but usually has important ecological function. Secondary metabolites may include pigments, antibiotics or waste products derived from partially metabolized xenobiotics. The study of the metabolome is called
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analysis, such as large molecules (>500 Da) or relatively non-reactive compounds. NMR is not a very sensitive technique with a lower limit of detection of about 5 μM. Typically 50-150 compounds can be identified by NMR-based metabolomic studies.
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The chemical data includes >40,000 metabolite structures with detailed descriptions, extensive chemical classifications, synthesis information and observed/calculated chemical properties. It also contains nearly 10,000 experimentally measured
366:(HMDB) is a freely available, open-access database containing detailed data on more than 40,000 metabolites that have already been identified or are likely to be found in the human body. The HMDB contains three kinds of information: 501:– and of an animal (a mammal) across different life stages – was released online. The data differentiates by brain regions and the metabolic changes could be "mapped to existing gene and protein brain atlases". 411:
metabolites), the human CSF metabolome contains nearly 500 different compounds while the human saliva metabolome contains approximately 400 different metabolites, including many bacterial products.
182:). The first book on metabolomics was published in 2003. The first journal dedicated to metabolomics (titled simply "Metabolomics") was launched in 2005 and is currently edited by Prof. 194:
The metabolome reflects the interaction between an organism's genome and its environment. As a result, an organism's metabolome can serve as an excellent probe of its
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Goodacre R, Vaidyanathan S, Dunn WB, Harrigan GG, Kell DB (May 2004). "Metabolomics by numbers: acquiring and understanding global metabolite data".
670:"Nonlinear data alignment for UPLC-MS and HPLC-MS based metabolomics: quantitative analysis of endogenous and exogenous metabolites in human serum" 489:
Secondary electrospray ionization (SESI-MS) can discriminate between eleven E. Coli strains thanks to the volatile organic compound profiling.
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and its environment). Metabolites can be measured (identified, quantified or classified) using a number of different technologies including
334:. The latter three databases are specific to human biofluids. A number of very popular general metabolite databases also exist including 1623:
Smith CA, O'Maille G, Want EJ, Qin C, Trauger SA, Brandon TR, et al. (December 2005). "METLIN: a metabolite mass spectral database".
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of molecules. Molecules or molecular fragments are typically charged or ionized by spraying them through a charged field (
278:, fatty acids) and peptides while GC-MS is best for detecting small molecules (<500 Da) and highly volatile compounds ( 719:"Effect of slow growth on metabolism of Escherichia coli, as revealed by global metabolite pool ("metabolome") analysis" 1265:"Multi-platform characterization of the human cerebrospinal fluid metabolome: a comprehensive and quantitative update" 1774:"Detection of Escherichia coli via VOC profiling using secondary electrospray ionization-mass spectrometry (SESI-MS)" 450: 791:
Fiehn O, Kloska S, Altmann T (February 2001). "Integrated studies on plant biology using multiparallel techniques".
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Nuclear magnetic resonance (NMR) spectroscopy is an analytical chemistry technique that measures the absorption of
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Oliver SG, Winson MK, Kell DB, Baganz F (September 1998). "Systematic functional analysis of the yeast genome".
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Louis P, Hold GL, Flint HJ (October 2014). "The gut microbiota, bacterial metabolites and colorectal cancer".
1527:"The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases" 1821: 1427:"MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data" 467: 323: 470:
is a freely accessible, online database of >2,700 small molecule metabolites found in or produced by
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is a freely accessible, online database of >2,000 small molecule metabolites found in or produced by
186:. Some of the more significant early papers on metabolome analysis are listed in the references below. 382: 326:
or ECMDB, the Arabidopsis metabolome database or AraCyc as well as the Urine Metabolome Database, the
828:"Combining genomics, metabolome analysis, and biochemical modelling to understand metabolic networks" 420: 363: 331: 319: 315: 215: 126: 1961: 589: 424: 339: 1966: 254: 114: 1474:
Kopka J, Schauer N, Krueger S, Birkemeyer C, Usadel B, Bergmüller E, et al. (April 2005).
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Tejero Rioseras A, Garcia Gomez D, Ebert BE, Blank LM, Ibáñez AJ, Sinues PM (October 2017).
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Haug K, Salek RM, Conesa P, Hastings J, de Matos P, Rijnbeek M, et al. (January 2013).
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radiation of specific nuclei when molecules containing those nuclei are placed in strong
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Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, Gilham F, et al. (January 2010).
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Psychogios N, Hau DD, Peng J, Guo AC, Mandal R, Bouatra S, et al. (February 2011).
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Wishart DS, Jewison T, Guo AC, Wilson M, Knox C, Liu Y, et al. (January 2013).
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Mandal R, Guo AC, Chaudhary KK, Liu P, Yallou FS, Dong E, et al. (April 2012).
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Guo AC, Jewison T, Wilson M, Liu Y, Knox C, Djoumbou Y, et al. (January 2013).
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Jewison T, Knox C, Neveu V, Djoumbou Y, Guo AC, Lee J, et al. (January 2012).
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Wishart DS, Tzur D, Knox C, Eisner R, Guo AC, Young N, et al. (January 2007).
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Bouatra S, Aziat F, Mandal R, Guo AC, Wilson MR, Knox C, et al. (Sep 2013).
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Ding J, Ji J, Rabow Z, Shen T, Folz J, Brydges CR, et al. (October 2021).
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Metabolic Profiling: Its Role in Biomarker Discovery and Gene Function Analysis
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The word metabolome appears to be a blending of the words "metabolite" and "
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is directly involved in the normal growth, development, and reproduction. A
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chemicals found within a biological sample. The biological sample can be a
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Lu W, Su X, Klein MS, Lewis IA, Fiehn O, Rabinowitz JD (June 2017).
1826: 955:"Metabolite Measurement: Pitfalls to Avoid and Practices to Follow" 843: 514: 302: 199: 175: 118: 110: 78: 74: 38: 34: 1281: 343: 287: 283: 42: 917: 521:
via their metabolome. In particular, the conversion of primary
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Mass spectrometry is an analytical technique that measures the
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Tweeddale H, Notley-McRobb L, Ferenci T (October 1998).
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analysis, such as sugars, amines or volatile liquids or
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Weckwerth W (2003). "Metabolomics in systems biology".
257:), bombarding them with electrons from a hot filament ( 125:, etc.) as well as exogenous chemicals (such as drugs, 574: 16:
Complete set of small molecules in a biological sample
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Fahy E, Sud M, Cotter D, Subramaniam S (July 2007).
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that are naturally produced by an organism (such as
1099: 790: 141:) that are not naturally produced by an organism. 1668:"HMDB 3.0--The Human Metabolome Database in 2013" 1948: 1148: 765: 625:"Current progress in computational metabolomics" 357: 25:General schema showing the relationships of the 1847: 1378:"KEGG: kyoto encyclopedia of genes and genomes" 1312: 1310: 1258: 1256: 1196: 1194: 431:). The YMDB contains two kinds of information: 1909: 952: 1850:"A metabolome atlas of the aging mouse brain" 570: 568: 396: 1905: 1903: 1659: 1616: 1576:"LIPID MAPS online tools for lipid research" 1567: 1518: 1467: 1418: 1375: 1369: 1307: 1253: 1191: 1142: 1093: 1044: 995: 759: 525:to secondary bile acids as a consequence of 414: 911: 868: 819: 784: 657: 613: 189: 178:) and the complete set of transcripts (the 1822:"A map of mouse brain metabolism in aging" 1149:Mueller LA, Zhang P, Rhee SY (June 2003). 710: 565: 497:In 2021, the first brain metabolome atlas 1900: 1883: 1873: 1797: 1748: 1691: 1599: 1550: 1501: 1491: 1450: 1401: 1352: 1342: 1290: 1280: 1236: 1226: 1174: 1125: 1076: 1027: 978: 874: 851: 742: 693: 640: 588: 493:Metabolome atlas of the aging mouse brain 1102:"ECMDB: the E. coli Metabolome Database" 889:10.1146/annurev.arplant.54.031902.135014 504: 462:The Escherichia coli Metabolome Database 20: 1771: 619: 308: 1949: 770:. Boston: Kluwer Academic Publishers. 766:Harrigan GG, Goodacre R, eds. (2003). 1053:"YMDB: the Yeast Metabolome Database" 1004:"HMDB: the Human Metabolome Database" 971:10.1146/annurev-biochem-061516-044952 825: 174:), the complete set of proteins (the 1376:Kanehisa M, Goto S (January 2000). 832:Comparative and Functional Genomics 330:(CSF) Metabolome Database and the 13: 1637:10.1097/01.ftd.0000179845.53213.39 14: 1978: 1942: 455:high resolution mass spectrometry 451:Secondary electrospray ionization 214:(LC), gas chromatography (GC) or 1476:": the Golm Metabolome Database" 793:Current Opinion in Biotechnology 735:10.1128/JB.180.19.5109-5116.1998 664:Nordström A, O'Maille G, Qin C, 1841: 1814: 1765: 1708: 946: 877:Annual Review of Plant Biology 53:refers to the complete set of 1: 1586:(Web Server issue): W606-12. 1493:10.1093/bioinformatics/bti236 959:Annual Review of Biochemistry 932:10.1016/j.tibtech.2004.03.007 805:10.1016/S0958-1669(00)00165-8 599:10.1016/S0167-7799(98)01214-1 558: 358:The Human Metabolome Database 1912:Nature Reviews. Microbiology 1772:Zhu J, Hill JE (June 2013). 1344:10.1371/journal.pone.0016957 1319:"The human serum metabolome" 1228:10.1371/journal.pone.0073076 1203:"The human urine metabolome" 7: 1625:Therapeutic Drug Monitoring 1112:(Database issue): D625-30. 1063:(Database issue): D815-20. 629:Briefings in Bioinformatics 536: 468:E. Coli Metabolome Database 324:E. coli Metabolome Database 229:. The frequency (i.e. the 10: 1983: 1875:10.1038/s41467-021-26310-y 1741:10.1038/s41598-017-14554-y 1678:(Database issue): D801-7. 1537:(Database issue): D473-9. 1437:(Database issue): D781-6. 1014:(Database issue): D521-6. 397:Human biofluid metabolomes 161: 127:environmental contaminants 421:Yeast Metabolome Database 415:Yeast Metabolome Database 364:Human Metabolome Database 332:Serum Metabolome Database 320:Yeast Metabolome Database 316:Human Metabolome Database 216:capillary electrophoresis 198:(i.e. the product of its 1790:10.1016/j.fm.2012.12.008 481:Biochemical information. 478:Chemical information and 438:Biochemical information. 435:Chemical information and 425:Saccharomyces cerevisiae 376:Biochemical information. 373:Clinical information and 340:Golm Metabolome Database 190:Measuring the metabolome 920:Trends in Biotechnology 723:Journal of Bacteriology 577:Trends in Biotechnology 548:Protein electrophoresis 402:(involving NMR, GC-MS, 255:electrospray ionization 1672:Nucleic Acids Research 1580:Nucleic Acids Research 1531:Nucleic Acids Research 1431:Nucleic Acids Research 1382:Nucleic Acids Research 1106:Nucleic Acids Research 1057:Nucleic Acids Research 1008:Nucleic Acids Research 529:in the colon promotes 73:, a tissue extract, a 46: 1854:Nature Communications 1167:10.1104/pp.102.017236 505:Intestinal metabolome 391:University of Calgary 387:University of Alberta 370:Chemical information, 263:liquid chromatography 212:liquid chromatography 24: 674:Analytical Chemistry 527:bacterial metabolism 338:, MetaboLights, the 309:Metabolome databases 251:mass-to-charge ratio 151:secondary metabolite 1924:10.1038/nrmicro3344 1866:2021NatCo..12.6021D 1733:2017NatSR...714236T 1684:10.1093/nar/gks1065 1443:10.1093/nar/gks1004 1394:10.1093/nar/28.1.27 1335:2011PLoSO...616957P 1219:2013PLoSO...873076B 445:fermented beverages 328:Cerebrospinal Fluid 259:electron ionization 1721:Scientific Reports 1592:10.1093/nar/gkm324 1543:10.1093/nar/gkp875 1503:20.500.11850/33179 1118:10.1093/nar/gks992 1069:10.1093/nar/gkr916 1020:10.1093/nar/gkl923 642:10.1093/bib/bbm030 623:(September 2007). 553:Protein sequencing 513:contribute to the 499:of the mouse brain 267:gas chromatography 147:primary metabolite 47: 37:, and metabolome ( 1778:Food Microbiology 777:978-1-4020-7370-0 686:10.1021/ac060245f 519:colorectal cancer 509:Human intestinal 208:mass spectrometry 1974: 1936: 1935: 1907: 1898: 1897: 1887: 1877: 1845: 1839: 1838: 1836: 1834: 1818: 1812: 1811: 1801: 1769: 1763: 1762: 1752: 1712: 1706: 1705: 1695: 1663: 1657: 1656: 1620: 1614: 1613: 1603: 1571: 1565: 1564: 1554: 1522: 1516: 1515: 1505: 1495: 1471: 1465: 1464: 1454: 1422: 1416: 1415: 1405: 1373: 1367: 1366: 1356: 1346: 1314: 1305: 1304: 1294: 1284: 1260: 1251: 1250: 1240: 1230: 1198: 1189: 1188: 1178: 1155:Plant Physiology 1146: 1140: 1139: 1129: 1097: 1091: 1090: 1080: 1048: 1042: 1041: 1031: 999: 993: 992: 982: 950: 944: 943: 915: 909: 908: 872: 866: 865: 855: 826:Fiehn O (2001). 823: 817: 816: 788: 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44: 40: 36: 32: 31:transcriptome 28: 23: 19: 1915: 1911: 1857: 1853: 1843: 1831:. Retrieved 1825: 1816: 1784:(2): 412–7. 1781: 1777: 1767: 1727:(1): 14236. 1724: 1720: 1710: 1675: 1671: 1661: 1628: 1624: 1618: 1583: 1579: 1569: 1534: 1530: 1520: 1483: 1479: 1469: 1434: 1430: 1420: 1388:(1): 27–30. 1385: 1381: 1371: 1326: 1322: 1272: 1268: 1210: 1206: 1158: 1154: 1144: 1109: 1105: 1095: 1060: 1056: 1046: 1011: 1007: 997: 962: 958: 948: 923: 919: 913: 880: 876: 870: 835: 831: 821: 796: 792: 786: 767: 761: 726: 722: 712: 677: 673: 668:(May 2006). 659: 632: 628: 615: 583:(9): 373–8. 580: 576: 508: 496: 488: 484: 465: 449: 441: 418: 406:, LC-MS and 400: 379: 361: 312: 301:or even the 296: 248: 235:NMR spectrum 220: 193: 184:Roy Goodacre 165: 156:metabolomics 143: 50: 48: 18: 1860:(1): 6021. 1833:15 November 799:(1): 82–6. 297:Unlike the 139:xenobiotics 123:antibiotics 99:fatty acids 87:amino acids 83:metabolites 1957:Metabolism 1951:Categories 883:: 669–89. 621:Wishart DS 559:References 523:bile acids 511:microbiota 282:, amines, 168:chromosome 137:and other 115:co-factors 51:metabolome 1275:(4): 38. 666:Siuzdak G 585:CiteSeerX 348:LipidMaps 196:phenotype 63:organelle 1932:25198138 1894:34654818 1827:UC Davis 1808:23541210 1759:29079837 1702:23161693 1653:14774455 1645:16404815 1610:17584797 1561:19850718 1512:15613389 1461:23109552 1412:10592173 1363:21359215 1323:PLOS ONE 1301:22546835 1247:24023812 1207:PLOS ONE 1185:12805578 1136:23109553 1087:22064855 1038:17202168 989:28654323 940:15109811 897:14503007 862:18628911 813:11167078 704:16689529 651:17626065 537:See also 515:etiology 389:and the 303:proteome 200:genotype 176:proteome 119:pigments 111:vitamins 79:organism 75:biofluid 39:lipidome 35:proteome 1885:8519999 1862:Bibcode 1799:4425455 1750:5660155 1729:Bibcode 1693:3531200 1601:1933166 1552:2808959 1452:3531110 1354:3040193 1331:Bibcode 1292:3446266 1238:3762851 1215:Bibcode 1127:3531117 1078:3245085 1029:1899095 980:5734093 905:1197884 853:2447208 753:9748443 695:3705959 607:9744112 344:MetaCyc 288:alkanes 284:ketones 162:Origins 43:glycome 1930:  1892:  1882:  1806:  1796:  1757:  1747:  1700:  1690:  1651:  1643:  1608:  1598:  1559:  1549:  1510:  1459:  1449:  1410:  1403:102409 1400:  1361:  1351:  1299:  1289:  1245:  1235:  1183:  1176:166988 1173:  1134:  1124:  1085:  1075:  1036:  1026:  987:  977:  938:  903:  895:  860:  850:  811:  774:  751:  744:107546 741:  702:  692:  649:  605:  587:  404:ICP-MS 352:Metlin 299:genome 292:thiols 280:esters 276:lipids 172:genome 135:toxins 107:sugars 103:amines 71:tissue 27:genome 1649:S2CID 901:S2CID 243:GC-MS 239:LC-MS 67:organ 65:, an 1928:PMID 1890:PMID 1835:2021 1804:PMID 1755:PMID 1698:PMID 1641:PMID 1606:PMID 1557:PMID 1508:PMID 1457:PMID 1408:PMID 1359:PMID 1297:PMID 1243:PMID 1181:PMID 1132:PMID 1083:PMID 1034:PMID 985:PMID 936:PMID 893:PMID 858:PMID 809:PMID 772:ISBN 749:PMID 700:PMID 647:PMID 603:PMID 466:The 419:The 408:HPLC 362:The 350:and 336:KEGG 206:and 69:, a 59:cell 49:The 1920:doi 1880:PMC 1870:doi 1794:PMC 1786:doi 1745:PMC 1737:doi 1688:PMC 1680:doi 1633:doi 1596:PMC 1588:doi 1547:PMC 1539:doi 1498:hdl 1488:doi 1447:PMC 1439:doi 1398:PMC 1390:doi 1349:PMC 1339:doi 1287:PMC 1277:doi 1233:PMC 1223:doi 1171:PMC 1163:doi 1159:132 1122:PMC 1114:doi 1073:PMC 1065:doi 1024:PMC 1016:doi 975:PMC 967:doi 928:doi 885:doi 848:PMC 840:doi 801:doi 739:PMC 731:doi 727:180 690:PMC 682:doi 637:doi 595:doi 517:of 383:NMR 294:). 265:or 1953:: 1926:. 1916:12 1914:. 1902:^ 1888:. 1878:. 1868:. 1858:12 1856:. 1852:. 1824:. 1802:. 1792:. 1782:34 1780:. 1776:. 1753:. 1743:. 1735:. 1723:. 1719:. 1696:. 1686:. 1676:41 1674:. 1670:. 1647:. 1639:. 1629:27 1627:. 1604:. 1594:. 1584:35 1582:. 1578:. 1555:. 1545:. 1535:38 1533:. 1529:. 1506:. 1496:. 1484:21 1482:. 1478:. 1455:. 1445:. 1435:41 1433:. 1429:. 1406:. 1396:. 1386:28 1384:. 1380:. 1357:. 1347:. 1337:. 1325:. 1321:. 1309:^ 1295:. 1285:. 1271:. 1267:. 1255:^ 1241:. 1231:. 1221:. 1209:. 1205:. 1193:^ 1179:. 1169:. 1157:. 1153:. 1130:. 1120:. 1110:41 1108:. 1104:. 1081:. 1071:. 1061:40 1059:. 1055:. 1032:. 1022:. 1012:35 1010:. 1006:. 983:. 973:. 963:86 961:. 957:. 934:. 924:22 922:. 899:. 891:. 881:54 879:. 856:. 846:. 834:. 830:. 807:. 797:12 795:. 747:. 737:. 725:. 721:. 698:. 688:. 678:78 676:. 672:. 645:. 631:. 627:. 601:. 593:. 581:16 579:. 567:^ 533:. 346:, 342:, 290:, 286:, 158:. 133:, 129:, 121:, 117:, 113:, 109:, 105:, 101:, 97:, 93:, 89:, 45:). 41:, 33:, 29:, 1934:. 1922:: 1896:. 1872:: 1864:: 1837:. 1810:. 1788:: 1761:. 1739:: 1731:: 1725:7 1704:. 1682:: 1655:. 1635:: 1612:. 1590:: 1563:. 1541:: 1514:. 1500:: 1490:: 1463:. 1441:: 1414:. 1392:: 1365:. 1341:: 1333:: 1327:6 1303:. 1279:: 1273:4 1249:. 1225:: 1217:: 1211:8 1187:. 1165:: 1138:. 1116:: 1089:. 1067:: 1040:. 1018:: 991:. 969:: 942:. 930:: 907:. 887:: 864:. 842:: 836:2 815:. 803:: 780:. 755:. 733:: 706:. 684:: 653:. 639:: 633:8 609:. 597:: 453:- 427:(

Index


genome
transcriptome
proteome
lipidome
glycome
small-molecule
cell
organelle
organ
tissue
biofluid
organism
metabolites
amino acids
organic acids
nucleic acids
fatty acids
amines
sugars
vitamins
co-factors
pigments
antibiotics
environmental contaminants
food additives
toxins
xenobiotics
primary metabolite
secondary metabolite

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