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Double-stranded RNA

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These characteristics are found in the genomes of various organisms, as well as in the double-stranded RNA that was formerly referred to as the "replicative form" and subsequently thought to be a byproduct of phage RNA replication. Alternatively, they are found in artificial high molecular weight
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family. They typically have two distinct linear dsRNA segments, each approximately 2.0 kbp in length. Segments larger than 10 kbp are unlikely to be linked to specific virus-like particles, as no unique virus-like particles have been identified in samples prepared using various purification
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The widely recognized acidic forms of polyadenylate and polycytidylate can be introduced to these canonical double-stranded RNA species. Because the bases of these polyribonucleotides are protonated at pH values lower than adenine and cytosine's pK values, they assume a well-characterized
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The more or less abundant self-complementary sequences found in all other forms of RNA, including rRNA, mRNA, tRNA, single-stranded viral RNA, and viroid RNA, can likewise form double-helical secondary structures, albeit incomplete and/or irregular.
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Endogenous retroviruses, natural sense-antisense transcript pairs, mitochondrial transcripts, and repetitive nuclear sequences, including short and long interspersed elements (
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had noted early on that the 2โ€ฒ hydroxyl group on each RNA nucleotide would prevent RNA from forming a double helix similar to the one they had described for DNA.
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Salazar M, Fedoroff OY, Miller JM, Ribeiro NS, Reid BR (April 1993). "The DNA strand in DNA.RNA hybrid duplexes is neither B-form nor A-form in solution".
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but with the replacement of thymine by uracil and the adding of one oxygen atom. Despite the structural similarities, much less is known about dsRNA.
345:"Double-stranded RNA is produced by positive-strand RNA viruses and DNA viruses but not in detectable amounts by negative-strand RNA viruses" 195:
techniques. For this reason, these large dsRNAs were previously referred to as enigmatic dsRNAs, endogenous dsRNAs, or RNA plasmids.
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A base composition expected for an RNA duplex composed of two complementary, antiparallel strands stabilized by hydrogen bonds and
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Whitehead KA, Dahlman JE, Langer RS, Anderson DG (2011-07-15). "Silencing or stimulation? siRNA delivery and the immune system".
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Libonati M, Sorrentino S (2001). "Degradation of Double-Stranded RNA by Mammalian Pancreatic-Type Ribonucleases".
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High molecular weight RNA in the 'A' form is referred to as dsRNA and possesses the following characteristics:
251:"Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA" 392:
Jana S, Chakraborty C, Nandi S, Deb JK (November 2004). "RNA interference: potential therapeutic targets".
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double-stranded polyribonucleotide complexes like poly(A) ยท poly(U) or poly(I) ยท poly(C) complexes.
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dsRNA range in size from 1.5 to 20 kbp. Smaller dsRNAs (<2.0 kbp) are frequently associated with
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Schultz U, Kaspers B, Staeheli P (May 2004). "The interferon system of non-mammalian vertebrates".
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Lipfert J, Skinner GM, Keegstra JM, Hensgens T, Jager T, Dulin D, et al. (October 2014).
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A cooperative type of temperature transition profiles with ionic strength-dependent Tm values;
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Fukuhara T, Moriyama H (2008). "Endornavirus". In Mahy BW, Van Regenmortel MH (eds.).
513: 607: 584: 527: 517: 479: 444: 409: 374: 360: 325: 290: 231: 190:, and some of these dsRNAs have already been identified as viruses belonging to the 574: 564: 509: 471: 436: 401: 364: 356: 317: 280: 270: 223: 90:
and David R. Davies propose the double helix structure of RNA for the first time.
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The majority of them are consistently present in the host at a low concentration.
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Proceedings of the National Academy of Sciences of the United States of America
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They do not appear to have a noticeable impact on the phenotype of their host.
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Weber F, Wagner V, Rasmussen SB, Hartmann R, Paludan SR (May 2006).
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A molar absorbance (per phosphodiester group) lower than that of
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with two complementary strands found in cells. It is similar to
248: 213: 68:. In eukaryotes, dsRNA plays a role in the activation of the 49: 41: 551:
Sadeq S, Al-Hashimi S, Cusack CM, Werner A (February 2021).
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Zhang S, Wittig B (June 2015). "Alexander Rich 1924-2015".
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In general, dsRNAs share some significant characteristics:
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An absolute hypochromicity significantly more than ssRNA;
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They are not transcribed from the DNA of the host genome.
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Annual Review of Chemical and Biomolecular Engineering
606:(3rd ed.). Amsterdam: Elsevier/Academic Press. 182:
They are effectively carried to the next generation.
501: 624: 601: 209: 207: 138:double-stranded structure at acidic pH levels. 497: 495: 493: 508:. Vol. 341. Elsevier. pp. 234โ€“248. 204: 170:They show a remarkable resistance to RNase A. 490: 461: 578: 568: 368: 284: 274: 310:Developmental and Comparative Immunology 228:10.1146/annurev-chembioeng-061010-114133 17: 75: 40:They form the genetic material of some 625: 394:Applied Microbiology and Biotechnology 13: 14: 654: 553:"Endogenous Double-Stranded RNA" 361:10.1128/JVI.80.10.5059-5064.2006 595: 48:). dsRNA, such as viral RNA or 544: 455: 420: 385: 336: 301: 242: 1: 514:10.1016/s0076-6879(01)41155-4 198: 161: 22:Double-stranded RNA structure 93: 7: 638:Double-stranded RNA viruses 124:single-stranded RNA (ssRNA) 72:against viral infections. 46:double-stranded RNA viruses 27:Double-stranded RNA (dsRNA) 10: 659: 145: 106:Sedimentation coefficients 406:10.1007/s00253-004-1732-1 322:10.1016/j.dci.2003.09.009 604:Encyclopedia of Virology 117:hydrophobic interactions 276:10.1073/pnas.1407197111 23: 505:Methods in Enzymology 21: 570:10.3390/ncrna7010015 464:Nature Biotechnology 188:virus-like particles 76:History of discovery 70:innate immune system 441:10.1021/bi00067a007 349:Journal of Virology 267:2014PNAS..11115408L 261:(43): 15408โ€“15413. 24: 613:978-0-12-374410-4 523:978-0-12-182242-2 435:(16): 4207โ€“4215. 355:(10): 5059โ€“5064. 650: 618: 617: 599: 593: 592: 582: 572: 548: 542: 541: 539: 538: 499: 488: 487: 476:10.1038/nbt.3262 459: 453: 452: 424: 418: 417: 389: 383: 382: 372: 340: 334: 333: 305: 299: 298: 288: 278: 246: 240: 239: 211: 81:Watson and Crick 54:RNA interference 658: 657: 653: 652: 651: 649: 648: 647: 623: 622: 621: 614: 600: 596: 549: 545: 536: 534: 524: 500: 491: 460: 456: 425: 421: 390: 386: 341: 337: 306: 302: 247: 243: 212: 205: 201: 164: 148: 111: 96: 78: 12: 11: 5: 656: 646: 645: 640: 635: 620: 619: 612: 594: 557:Non-Coding RNA 543: 522: 489: 470:(6): 593โ€“598. 454: 419: 400:(6): 649โ€“657. 384: 335: 316:(5): 499โ€“508. 300: 241: 202: 200: 197: 192:Partitiviridae 184: 183: 180: 177: 174: 171: 163: 160: 147: 144: 131: 130: 127: 120: 113: 112:) above 8โ€“9 S; 109: 103: 95: 92: 88:Alexander Rich 77: 74: 52:, can trigger 9: 6: 4: 3: 2: 655: 644: 641: 639: 636: 634: 633:Nucleic acids 631: 630: 628: 615: 609: 605: 598: 590: 586: 581: 576: 571: 566: 562: 558: 554: 547: 533: 529: 525: 519: 515: 511: 507: 506: 498: 496: 494: 485: 481: 477: 473: 469: 465: 458: 450: 446: 442: 438: 434: 430: 423: 415: 411: 407: 403: 399: 395: 388: 380: 376: 371: 366: 362: 358: 354: 350: 346: 339: 331: 327: 323: 319: 315: 311: 304: 296: 292: 287: 282: 277: 272: 268: 264: 260: 256: 252: 245: 237: 233: 229: 225: 221: 217: 210: 208: 203: 196: 193: 189: 181: 178: 175: 172: 169: 168: 167: 159: 157: 153: 143: 139: 135: 128: 125: 121: 118: 114: 107: 104: 101: 100: 99: 91: 89: 84: 82: 73: 71: 67: 63: 60:, as well as 59: 55: 51: 47: 43: 38: 36: 32: 28: 20: 16: 603: 597: 560: 556: 546: 535:. Retrieved 504: 467: 463: 457: 432: 429:Biochemistry 428: 422: 397: 393: 387: 352: 348: 338: 313: 309: 303: 258: 254: 244: 222:(1): 77โ€“96. 219: 215: 185: 165: 149: 140: 136: 132: 97: 85: 79: 64:response in 39: 26: 25: 15: 66:vertebrates 627:Categories 537:2024-06-07 199:References 162:Properties 62:interferon 58:eukaryotes 563:(1): 15. 94:Structure 86:In 1995, 589:33669629 532:11582780 484:26057974 414:15372214 379:16641297 330:15062646 295:25313077 236:22432611 580:7930956 449:7682844 370:1472073 286:4217419 263:Bibcode 146:Sources 42:viruses 610:  587:  577:  530:  520:  482:  447:  412:  377:  367:  328:  293:  283:  234:  156:LINEs 152:SINEs 50:siRNA 608:ISBN 585:PMID 528:PMID 518:ISBN 480:PMID 445:PMID 410:PMID 375:PMID 326:PMID 291:PMID 232:PMID 154:and 110:20,w 643:RNA 575:PMC 565:doi 510:doi 472:doi 437:doi 402:doi 365:PMC 357:doi 318:doi 281:PMC 271:doi 259:111 224:doi 56:in 35:DNA 31:RNA 29:is 629:: 583:. 573:. 559:. 555:. 526:. 516:. 492:^ 478:. 468:33 466:. 443:. 433:32 431:. 408:. 398:65 396:. 373:. 363:. 353:80 351:. 347:. 324:. 314:28 312:. 289:. 279:. 269:. 257:. 253:. 230:. 218:. 206:^ 108:(s 616:. 591:. 567:: 561:7 540:. 512:: 486:. 474:: 451:. 439:: 416:. 404:: 381:. 359:: 332:. 320:: 297:. 273:: 265:: 238:. 226:: 220:2 126:. 119:; 44:(

Index


RNA
DNA
viruses
double-stranded RNA viruses
siRNA
RNA interference
eukaryotes
interferon
vertebrates
innate immune system
Watson and Crick
Alexander Rich
Sedimentation coefficients
hydrophobic interactions
single-stranded RNA (ssRNA)
SINEs
LINEs
virus-like particles
Partitiviridae


doi
10.1146/annurev-chembioeng-061010-114133
PMID
22432611
"Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA"
Bibcode
2014PNAS..11115408L
doi

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