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Stimulus-triggered acquisition of pluripotency

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engaged in "research misconduct", falsifying data on two occasions. The co-authors were cleared of misconduct, but bore "grave responsibility" for not verifying the data themselves. RIKEN also announced that an internal group had been established to verify whether the ‘stimulus-triggered acquisition of pluripotency’ is reproducible. Obokata maintained her innocence and said she would appeal the decision. On June 4, 2014, Obokata agreed to retract both the article and the "letter". The article was officially retracted on July 2, 2014. An article analyzing the controversy concluded that while issues of image manipulation, duplication and plagiarism were potentially detectable, the reviewers could not have concluded that the article was the product of academic misconduct prior to acceptance.
106:. On average only 25% of cells survived the acid treatment, but over 50% of those that survived converted to Oct4-GFPCD45 pluripotent cells. The researchers also claimed that treatment with bacterial toxins or physical stress were conducive to the acquisition of pluripotent markers. STAP cells injected into mouse embryos grew into a variety of tissues and organs found throughout the body. According to the researchers, the 236:, was discovered dead by apparent suicide by hanging in a building at the RIKEN facility in Kobe, Japan. On September 24, 2015, the RIKEN scientists reported that Obokata's STAP cells came from embryonic stem cell contamination, while on the same day, research groups who had attempted to reproduce the STAP protocol jointly reported that they had found it irreproducible. 260:
One previous way of creating stem cells has been via genetic manipulation of adult cells into iPS cells. Progress on iPS-based therapies has been slow due to regulatory hurdles surrounding genetic manipulation. Additionally, iPS techniques have an observed efficiency of around 1%, significantly lower
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papers were released, all scientists who tried to duplicate Obokata's results failed and suspicion arose that her results were due to error or fraud. An investigation into alleged irregularities was launched by RIKEN on February 15, 2014. The allegations questioned the use of seemingly duplicated
253:, a pioneer of iPS research, called the findings "important to understand nuclear reprogramming ... a new approach to generate iPS-like cells". The idea that STAP cells can form placental tissue meant they could have made cloning considerably easier by bypassing the need for a donor egg and 244:
If the findings had proven to be valid, stimulus-triggered pluripotency cells could have been generated more easily and efficiently than by existing iPS techniques. Adapted to human tissue, the technique could have led to cheap and simple procedures to create patient-specific stem cells. Stem-cell
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On March 11, Teruhiko Wakayama, one of Obokata's coauthors, urged all the researchers involved to withdraw the articles, citing many "questionable points". Charles Vacanti said he opposed their retraction and posted a "revised protocol" for creating STAP cells on his own website, which was taken
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Initially Obokata's findings were met with skepticism, even among her coworkers. "Everyone said it was an artefact – there were some really hard days", she recalled. The manuscript describing the work was rejected multiple times before its eventual publication as an article (together with a
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On March 14, RIKEN released an interim report of the investigation. Out of the six items being investigated, the committee concluded that there was inappropriate handling of data on two items, but did not judge the mishandling as research misconduct. On April 1, RIKEN concluded that Obokata had
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also announced that they were investigating. Several stem-cell scientists defended Obokata or reserved their opinion while the investigation was ongoing. To address the problem of reproducibility in other laboratories, Obokata published some technical 'tips' on the protocols on March 5 while
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Obokata, Haruko; Sasai, Yoshiki; Niwa, Hitoshi; Kadota, Mitsutaka; Andrabi, Munazah; Takata, Nozomu; Tokoro, Mikiko; Terashita, Yukari; Yonemura, Shigenobu; Vacanti, Charles A.; Wakayama, Teruhiko (January 29, 2014). "Bidirectional developmental potential in reprogrammed cells with acquired
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De Los Angeles, Alejandro; Ferrari, Francesco; Fujiwara, Yuko; Mathieu, Ronald; Lee, Soohyun; Lee, Semin; Tu, Ho-Chou; Ross, Samantha; Chou, Stephanie; Nguyen, Minh; Wu, Zhaoting; Theunissen, Thorold W.; Powell, Benjamin E.; Imsoonthornruksa, Sumeth; Chen, Jiekai; Borkent, Marti; Krupalnik,
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In the wake of the controversy, observers, journalists, and former members of RIKEN have stated that the organization is riddled with unprofessional and inadequate scientific rigor and consistency, and that this is reflective of serious issues with scientific research in Japan in general.
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mice " to be healthy, fertile, and normal" after one-to-two years of observation. Additionally, these mice produced healthy offspring, thereby demonstrating germline transmission which is "a strict criterion for pluripotency as well as genetic and epigenetic normality."
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Vladislav; Lujan, Ernesto; Wernig, Marius; Hanna, Jacob H.; Hochedlinger, Konrad; Pei, Duanqing; Jaenisch, Rudolf; Deng, Hongkui; Orkin, Stuart H.; Park, Peter J.; Daley, George Q. (2015). "Failure to replicate the STAP cell phenomenon".
198:. A series of experiments, first turning a mouse embryo green by fluorescently tagging STAP cells, then videotaping the transformation of T-cells into pluripotent cells, finally convinced skeptics that the results were real. 136:
inhibitory mechanisms may block conversion to pluripotency. Research is underway to generate stimulus-triggered acquisition of pluripotency (STAP) cells using human tissue: in February 2014, Charles Vacanti and Koji Kojima
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by subjecting ordinary cells to certain types of stress, such as the application of a bacterial toxin, submersion in a weak acid, or physical trauma. The technique gained prominence in January 2014 when research by
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RIKEN commissioned a team of scientists to attempt to verify Obokata's original results and asked Obokata to participate in the effort. On August 5, 2014, Obokata's supervisor and co-author of the original paper,
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Konno, Daijiro; Kasukawa, Takeya; Hashimoto, Kosuke; Itoh, Takehiko; Suetsugu, Taeko; Miura, Ikuo; Wakana, Shigeharu; Carninci, Piero; Matsuzaki, Fumio (2015). "STAP cells are derived from ES cells".
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from newborn mice could be transformed into cells that behaved much like stem cells. She repeated the experiment with other cell types including brain, skin, and muscle cells with the same result.
130:(iPS). It was not clear why ordinary cells do not convert into stem cells when subjected to similar stimuli under ordinary conditions, such as acidity in the body; Obokata et al. suggested that 522: 54:, was launched. On April 1, 2014, RIKEN concluded that Obokata had falsified data to obtain her results. On June 4, 2014, Obokata agreed to retract the papers. On August 5, 2014, 180:, she verified at the request of Charles Vacanti that some of the cultured cells she was working with shrank to the size of stem cells after being mechanically injured in a 950: 659: 909: 270: 801: 58:—Obokata's supervisor at RIKEN and one of the coauthors on the STAP cell papers—was found dead at a RIKEN facility after an apparent suicide by hanging. 928: 46:. Over the following months, all scientists who tried to duplicate her results failed, and suspicion arose that Obokata's results were due to error or 633: 434: 1243: 568: 141:
researchers originally involved in the discovery and publication of STAP) claimed to have preliminary results of STAP cells generated from human
1333: 184:. She went on as directed, to test the effects of various stimuli on cells. After modifying the technique, Obokata was able to show that 682: 555:
They put them in a weak acid solution (pH 5.7) for 30 minutes at 37°C, and then put them into petri dishes and grew them at normal pH.
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STAP would have been a radically simpler method of stem cell generation than previously researched methods as it requires neither
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of 5.7 for half an hour. Following this treatment, the cells were verified to be pluripotent by observing increasing levels of
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Obokata, Haruko; et al. (January 30, 2014). "Stimulus-triggered fate conversion of somatic cells into pluripotency".
409: 161:—could be spontaneously recovered from ordinary tissues that are stressed via mechanical injury or increased acidity. 538: 715: 165: 211:
images in the papers, and reported failure to reproduce her results in other prominent stem-cell laboratories.
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called STAP cells "a major scientific discovery that will be opening a new era in stem-cell biology".
145:, but concomitantly cautioned that these preliminary results require further analysis and validation. 1271: 100: 1353: 246: 177: 280: 47: 1100: 1038: 978: 873: 96: 700: 8: 1318: 123: 1104: 1042: 982: 877: 779: 758: 1216: 1070: 1010: 733: 495: 138: 107: 1235: 1208: 1178: 1170: 1126: 1118: 1062: 1054: 1002: 994: 891: 543:"Breakthrough in stem cell creation using acid bath - What did the research involve?" 514: 487: 185: 1302: 1252: 1220: 737: 1227: 1200: 1160: 1108: 1074: 1046: 1014: 986: 881: 838: 815: 725: 720: 506: 499: 479: 194: 168:(BWH), while she was studying as a post doc under Charles Vacanti, and then at the 158: 42: 164:
The technique for producing STAP cells was subsequently studied by Obokata at the
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and Martin Vacanti conducted studies that led them to the idea that stem cells—
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Essential technical tips for STAP cell conversion culture from somatic cells
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expressed in embryonic stem cells) over the following week using an Oct4-
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promising that the detailed procedure would be published in due course.
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spleen cells to certain stresses including an acidic medium with a
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Haruko Obokata, Yoshiki Sasai and Hitoshi Niwa (March 2014).
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PROTOCOL FOR GENERATING STAP CELLS FROM MATURE SOMATIC CELLS
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STAP cells were supposedly able to differentiate into
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shorter jointly-written "letter") within the journal
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Proposed method of generating pluripotent stem cells
465: 463: 461: 459: 457: 455: 839:"Report on STAP Cell Research Paper Investigation" 697:"STAP cell pioneer nearly gave up on her research" 80:claimed that STAP cells were produced by exposing 962: 1310: 452: 379:Kameda, Masaaki; Otake, Tomoko (April 1, 2014). 716:"Acid-bath stem-cell study under investigation" 651: 381:"Obokata falsified data in STAP papers: probe" 22:Stimulus-triggered acquisition of pluripotency 836: 813: 435:"STAP paper co-author Sasai commits suicide" 537: 531: 407: 378: 374: 372: 951:STAP paper co-author Sasai commits suicide 325:"Acid bath offers easy path to stem cells" 1164: 1112: 885: 862:"Research integrity: Cell-induced stress" 859: 713: 403: 401: 349: 322: 318: 316: 314: 312: 310: 308: 306: 304: 302: 300: 369: 1303:Stress turns ordinary cells pluripotent 1149:"Stem cells: Reprogramming with low pH" 1146: 929:Ongoing Obokata story seeks out scandal 601: 599: 597: 595: 593: 591: 589: 566: 469: 1311: 714:Cyranoski, David (February 17, 2014). 657: 605: 427: 398: 297: 28:) was a proposed method of generating 1334:Discovery and invention controversies 1153:Nature Reviews Molecular Cell Biology 772:"Prof. wants STAP findings withdrawn" 680: 560: 352:"Stem cell 'major discovery' claimed" 350:Gallagher, James (January 29, 2014). 323:Cyranoski, David (January 29, 2014). 261:than the claimed efficiency of STAP. 220:down after he resigned his BWH post. 50:. An investigation by her employer, 683:"New Method for Reprogramming Cells" 586: 172:Center for Developmental Biology in 761:. Nature Protocols Discussion Forum 631: 567:Thomson, Helen (January 29, 2014). 13: 1305:News release at RIKEN with videos. 1140: 658:Connor, Steve (February 9, 2014). 343: 202:Investigation into disputed claims 14: 1365: 1299:by Haruko Obokata, March 25, 2016 1283: 681:Grens, Kerry (January 29, 2014). 814:Press Release (March 14, 2014). 778:. March 11, 2014. Archived from 606:Sample, Ian (January 29, 2014). 1081: 940: 921: 902: 853: 837:Press Release (April 1, 2014). 830: 807: 794: 764: 751: 707: 689: 674: 239: 1253:Update on the STAP cell papers 128:induced pluripotent stem cells 1: 291: 118:cells, meaning they would be 408:Elaine Lies (June 4, 2014). 206:In the months after the two 176:. In 2008, while working at 166:Brigham and Women's Hospital 7: 1260:"The rise and fall of STAP" 264: 72: 10: 1370: 148: 860:Cyranoski, David (2014). 730:10.1038/nature.2014.14738 331:. Nature Publishing Group 245:researcher Dusko Ilic of 800:Charles A Vacanti (2014) 65:nor the introduction of 40:et al. was published in 1295:March 31, 2016, at the 959:, August 6, 2014, p. 1 178:Harvard Medical School 1349:2014 in biotechnology 1329:Medical controversies 1226:(Retracted, see 1147:Baumann, Kim (2014). 937:, July 5, 2014, p. 19 505:(Retracted, see 281:Stem cell controversy 247:King's College London 67:transcription factors 703:on January 30, 2014. 541:(January 30, 2014). 153:In the early 2000s, 124:embryonic stem cells 97:transcription factor 1232:10.1038/nature13599 1205:10.1038/nature12969 1105:2015Natur.525..426. 1099:(7570): 426. 2015. 1051:10.1038/nature15513 1043:2015Natur.525E...6D 991:10.1038/nature15366 983:2015Natur.525E...4K 878:2014Natur.511..140C 776:The Yomiuri Shimbun 662:. independent.co.uk 511:10.1038/nature13598 484:10.1038/nature12968 1324:Induced stem cells 927:Schreiber, Mark, " 271:Induced stem cells 1339:Hoaxes in science 1272:"The Stress Test" 1199:(7485): 676–687. 782:on March 17, 2014 478:(7485): 641–647. 186:white blood cells 1361: 1279: 1267: 1249: 1245:Retraction Watch 1224: 1186: 1168: 1135: 1134: 1116: 1089:"STAP revisited" 1085: 1079: 1078: 1025: 1019: 1018: 966: 960: 944: 938: 925: 919: 918:, April 21, 2014 908:Otake, Tomoko, " 906: 900: 899: 889: 857: 851: 850: 848: 846: 834: 828: 827: 825: 823: 811: 805: 798: 792: 791: 789: 787: 768: 762: 755: 749: 748: 746: 744: 711: 705: 704: 693: 687: 686: 685:. The Scientist. 678: 672: 671: 669: 667: 655: 649: 648: 646: 644: 632:Thomson, Helen. 629: 623: 622: 620: 618: 603: 584: 583: 581: 579: 564: 558: 557: 552: 550: 535: 529: 528: 524:Retraction Watch 503: 467: 450: 449: 447: 445: 431: 425: 424: 422: 420: 405: 396: 395: 393: 391: 376: 367: 366: 364: 362: 347: 341: 340: 338: 336: 320: 159:spore-like cells 63:nuclear transfer 1369: 1368: 1364: 1363: 1362: 1360: 1359: 1358: 1354:Hoaxes in Japan 1309: 1308: 1297:Wayback Machine 1286: 1270: 1258: 1255:. March 6, 2014 1225: 1191:pluripotency". 1166:10.1038/nrm3754 1143: 1141:Further reading 1138: 1114:10.1038/525426a 1087: 1086: 1082: 1037:(7570): E6–E9. 1026: 1022: 977:(7570): E4–E5. 967: 963: 945: 941: 926: 922: 907: 903: 887:10.1038/511140a 872:(7508): 140–3. 858: 854: 844: 842: 835: 831: 821: 819: 812: 808: 799: 795: 785: 783: 770: 769: 765: 756: 752: 742: 740: 712: 708: 695: 694: 690: 679: 675: 665: 663: 656: 652: 642: 640: 630: 626: 616: 614: 604: 587: 577: 575: 565: 561: 548: 546: 536: 532: 504: 468: 453: 443: 441: 439:The Japan Times 433: 432: 428: 418: 416: 406: 399: 389: 387: 385:The Japan Times 377: 370: 360: 358: 348: 344: 334: 332: 321: 298: 294: 286:Masayuki Yamato 267: 251:Shinya Yamanaka 242: 204: 155:Charles Vacanti 151: 75: 19: 12: 11: 5: 1367: 1357: 1356: 1351: 1346: 1341: 1336: 1331: 1326: 1321: 1307: 1306: 1300: 1290:STAP HOPE PAGE 1285: 1284:External links 1282: 1281: 1280: 1276:The New Yorker 1268: 1256: 1250: 1187: 1142: 1139: 1137: 1136: 1080: 1020: 961: 939: 920: 901: 852: 829: 806: 793: 763: 750: 706: 688: 673: 650: 624: 585: 559: 530: 451: 426: 397: 368: 342: 295: 293: 290: 289: 288: 283: 278: 273: 266: 263: 241: 238: 203: 200: 182:capillary tube 150: 147: 78:Haruko Obokata 74: 71: 38:Haruko Obokata 17: 9: 6: 4: 3: 2: 1366: 1355: 1352: 1350: 1347: 1345: 1342: 1340: 1337: 1335: 1332: 1330: 1327: 1325: 1322: 1320: 1317: 1316: 1314: 1304: 1301: 1298: 1294: 1291: 1288: 1287: 1277: 1273: 1269: 1265: 1261: 1257: 1254: 1251: 1247: 1246: 1241: 1237: 1233: 1229: 1222: 1218: 1214: 1210: 1206: 1202: 1198: 1194: 1188: 1184: 1180: 1176: 1172: 1167: 1162: 1158: 1154: 1150: 1145: 1144: 1132: 1128: 1124: 1120: 1115: 1110: 1106: 1102: 1098: 1094: 1090: 1084: 1076: 1072: 1068: 1064: 1060: 1056: 1052: 1048: 1044: 1040: 1036: 1032: 1024: 1016: 1012: 1008: 1004: 1000: 996: 992: 988: 984: 980: 976: 972: 965: 958: 957: 952: 948: 943: 936: 935: 930: 924: 917: 916: 911: 905: 897: 893: 888: 883: 879: 875: 871: 867: 863: 856: 840: 833: 817: 810: 803: 797: 781: 777: 773: 767: 760: 754: 739: 735: 731: 727: 723: 722: 717: 710: 702: 698: 692: 684: 677: 661: 654: 639: 638:New Scientist 635: 628: 613: 609: 602: 600: 598: 596: 594: 592: 590: 574: 573:New Scientist 570: 563: 556: 544: 540: 534: 526: 525: 520: 516: 512: 508: 501: 497: 493: 489: 485: 481: 477: 473: 466: 464: 462: 460: 458: 456: 440: 436: 430: 415: 411: 404: 402: 386: 382: 375: 373: 357: 353: 346: 330: 326: 319: 317: 315: 313: 311: 309: 307: 305: 303: 301: 296: 287: 284: 282: 279: 277: 274: 272: 269: 268: 262: 258: 257:cultivation. 256: 252: 248: 237: 235: 234:Yoshiki Sasai 229: 225: 221: 217: 214: 209: 199: 197: 196: 189: 187: 183: 179: 175: 171: 167: 162: 160: 156: 146: 144: 140: 135: 134: 129: 125: 121: 117: 112: 109: 105: 102: 98: 94: 90: 86: 83: 79: 70: 68: 64: 59: 57: 56:Yoshiki Sasai 53: 49: 45: 44: 39: 34: 31: 27: 23: 16: 1275: 1263: 1244: 1242:,   1196: 1192: 1156: 1152: 1096: 1092: 1083: 1034: 1030: 1023: 974: 970: 964: 954: 942: 932: 923: 913: 904: 869: 865: 855: 843:. 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Index

pluripotent
stem cells
Haruko Obokata
Nature
fraud
RIKEN
Yoshiki Sasai
nuclear transfer
transcription factors
Haruko Obokata
CD45
murine
pH
Oct-4
transcription factor
GFP
transgene
chimaeric
placental
more potent
embryonic stem cells
induced pluripotent stem cells
in vivo
Harvard
fibroblasts
Charles Vacanti
spore-like cells
Brigham and Women's Hospital
RIKEN
Japan

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