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Plasmid

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295: 171: 40: 1197: 1209: 1185: 590:, usually an antibiotic resistance gene, which confers on the bacteria an ability to survive and proliferate in a selective growth medium containing the particular antibiotics. The cells after transformation are exposed to the selective media, and only cells containing the plasmid may survive. In this way, the antibiotics act as a filter to select only the bacteria containing the plasmid DNA. The vector may also contain other 306: 287: 520: 162:
refer to genetic elements that reproduce autonomously. Later in 1968, it was decided that the term plasmid should be adopted as the term for extrachromosomal genetic element, and to distinguish it from viruses, the definition was narrowed to genetic elements that exist exclusively or predominantly outside of the chromosome and can replicate autonomously.
922:, extra-chromosomal linear or circular DNA molecules which have been considered to be plasmids. These can range from 0.7 kb to 20 kb in size. The plasmids have been generally classified into two categories- circular and linear. Circular plasmids have been isolated and found in many different plants, with those in 903:, yeast vectors that rely on integration into the host chromosome for survival and replication, and are usually used when studying the functionality of a solo gene or when the gene is toxic. Also connected with the gene URA3, that codes an enzyme related to the biosynthesis of pyrimidine nucleotides (T, C); 329:
Plasmids can also be classified into incompatibility groups. A microbe can harbour different types of plasmids, but different plasmids can only exist in a single bacterial cell if they are compatible. If two plasmids are not compatible, one or the other will be rapidly lost from the cell. Different
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boxes, and an adjacent AT-rich region. Smaller plasmids make use of the host replicative enzymes to make copies of themselves, while larger plasmids may carry genes specific for the replication of those plasmids. A few types of plasmids can also insert into the host chromosome, and these integrative
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At a specified, low voltage, the migration rate of small linear DNA fragments is a function of their length. Large linear fragments (over 20 kb or so) migrate at a certain fixed rate regardless of length. This is because the molecules 'respirate', with the bulk of the molecule following the leading
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and used in biotechnical (fermentation) or biomedical (vaccine therapy) applications. Daughter cells that retain a copy of the plasmid survive, while a daughter cell that fails to inherit the plasmid dies or suffers a reduced growth-rate because of the lingering poison from the parent cell. Finally,
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to refer to "any extrachromosomal hereditary determinant." The term's early usage included any bacterial genetic material that exists extrachromosomally for at least part of its replication cycle, but because that description includes bacterial viruses, the notion of plasmid was refined over time to
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plasmids may therefore be assigned to different incompatibility groups depending on whether they can coexist together. Incompatible plasmids (belonging to the same incompatibility group) normally share the same replication or partition mechanisms and can thus not be kept together in a single cell.
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encoded by some of the transfer genes (see figure). Non-conjugative plasmids are incapable of initiating conjugation, hence they can be transferred only with the assistance of conjugative plasmids. An intermediate class of plasmids are mobilizable, and carry only a subset of the genes required for
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in the context of prokaryotes to refer to a plasmid that is capable of integrating into the chromosome. The integrative plasmids may be replicated and stably maintained in a cell through multiple generations, but at some stage, they will exist as an independent plasmid molecule. In the context of
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Another major use of plasmids is to make large amounts of proteins. In this case, researchers grow bacteria containing a plasmid harboring the gene of interest. Just as the bacterium produces proteins to confer its antibiotic resistance, it can also be induced to produce large amounts of proteins
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DNA structural instability can be defined as a series of spontaneous events that culminate in an unforeseen rearrangement, loss, or gain of genetic material. Such events are frequently triggered by the transposition of mobile elements or by the presence of unstable elements such as non-canonical
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Plasmids almost always carry at least one gene. Many of the genes carried by a plasmid are beneficial for the host cells, for example: enabling the host cell to survive in an environment that would otherwise be lethal or restrictive for growth. Some of these genes encode traits for antibiotic
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The function and origin of these plasmids remains largely unknown. It has been suggested that the circular plasmids share a common ancestor, some genes in the mitochondrial plasmid have counterparts in the nuclear DNA suggesting inter-compartment exchange. Meanwhile, the linear plasmids share
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that enable a bacterium to colonize a host and overcome its defences or have specific metabolic functions that allow the bacterium to utilize a particular nutrient, including the ability to degrade recalcitrant or toxic organic compounds. Plasmids can also provide bacteria with the ability to
782:, that can arise during artificial gene amplifications or in pathologic processes (e.g., cancer cell transformation). Episomes in eukaryotes behave similarly to plasmids in prokaryotes in that the DNA is stably maintained and replicated with the host cell. Cytoplasmic viral episomes (as in 1003:
In the latter, much larger volumes of bacterial suspension are grown from which a maxi-prep can be performed. In essence, this is a scaled-up miniprep followed by additional purification. This results in relatively large amounts (several hundred micrograms) of very pure plasmid DNA.
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Naturally occurring plasmids vary greatly in their physical properties. Their size can range from very small mini-plasmids of less than 1-kilobase pairs (kbp) to very large megaplasmids of several megabase pairs (Mbp). At the upper end, little differs between a megaplasmid and a
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particular genes. A wide variety of plasmids are commercially available for such uses. The gene to be replicated is normally inserted into a plasmid that typically contains a number of features for their use. These include a gene that confers resistance to particular antibiotics
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structural similarities such as invertrons with viral DNA and fungal plasmids, like fungal plasmids they also have low GC content, these observations have led to some hypothesizing that these linear plasmids have viral origins, or have ended up in plant mitochondria through
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Plasmids were historically used to genetically engineer the embryonic stem cells of rats to create rat genetic disease models. The limited efficiency of plasmid-based techniques precluded their use in the creation of more accurate human cell models. However, developments in
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The rate of migration for small linear fragments is directly proportional to the voltage applied at low voltages. At higher voltages, larger fragments migrate at continuously increasing yet different rates. Thus, the resolution of a gel decreases with increased voltage.
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include direct, inverted, and tandem repeats, which are known to be conspicuous in a large number of commercially available cloning and expression vectors. Insertion sequences can also severely impact plasmid function and yield, by leading to
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and unencapsidated, which have been found in fungi and various plants, from algae to land plants. In many cases, however, it may be difficult or impossible to clearly distinguish RNA plasmids from RNA viruses and other infectious RNAs.
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In contrast, plasmids used in biotechnology, such as pUC18, pBR322 and derived vectors, hardly ever contain toxin-antitoxin addiction systems, and therefore need to be kept under antibiotic pressure to avoid plasmid loss.
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to facilitate selection of plasmids with cloned inserts. Bacteria containing the plasmid can then be grown in large amounts, harvested, and the plasmid of interest may then be isolated using various methods of
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similar to the chromosome, yet use a plasmid-type replication mechanism such as the low copy number RepABC. As a result, they have been variously classified as minichromosomes or megaplasmids in the past. In
75:. While chromosomes are large and contain all the essential genetic information for living under normal conditions, plasmids are usually very small and contain additional genes for special circumstances. 4053: 243:, in danger of being lost in one of the segregating bacteria. Such single-copy plasmids have systems that attempt to actively distribute a copy to both daughter cells. These systems, which include the 996:. The former can be used to quickly find out whether the plasmid is correct in any of several bacterial clones. The yield is a small amount of impure plasmid DNA, which is sufficient for analysis by 1963:
Bruhn, Matthias; Schindler, Daniel; Kemter, Franziska S.; Wiley, Michael R.; Chase, Kitty; Koroleva, Galina I.; Palacios, Gustavo; Sozhamannan, Shanmuga; Waldminghaus, Torsten (30 November 2018).
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in 1958 to refer to extra-chromosomal genetic material that may replicate autonomously or become integrated into the chromosome. Since the term was introduced, however, its use has changed, as
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Plasmids may be present in an individual cell in varying number, ranging from one to several hundreds. The normal number of copies of plasmid that may be found in a single cell is called the
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Plasmids may be classified in a number of ways. Plasmids can be broadly classified into conjugative plasmids and non-conjugative plasmids. Conjugative plasmids contain a set of
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that promote cancer cell proliferation. In cancers, these episomes passively replicate together with host chromosomes when the cell divides. When these viral episomes initiate
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is used to mean a non-integrated extrachromosomal closed circular DNA molecule that may be replicated in the nucleus. Viruses are the most common examples of this, such as
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are frequently used to analyse purified plasmids. These enzymes specifically break the DNA at certain short sequences. The resulting linear fragments form 'bands' after
194:. A typical bacterial replicon may consist of a number of elements, such as the gene for plasmid-specific replication initiation protein (Rep), repeating units called 130:, plasmids are "naked" DNA and do not encode genes necessary to encase the genetic material for transfer to a new host; however, some classes of plasmids encode the 495:(non-B) structures. Accessory regions pertaining to the bacterial backbone may engage in a wide range of structural instability phenomena. Well-known catalysts of 232:. Plasmids are generally circular, but examples of linear plasmids are also known. These linear plasmids require specialized mechanisms to replicate their ends. 516:
backbone sequences would pointedly reduce the propensity for such events to take place, and consequently, the overall recombinogenic potential of the plasmid.
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Plasmids are often used to purify a specific sequence, since they can easily be purified away from the rest of the genome. For their use as vectors, and for
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Plasmids are the most-commonly used bacterial cloning vectors. These cloning vectors contain a site that allows DNA fragments to be inserted, for example a
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has become the preferred term for autonomously replicating extrachromosomal DNA. At a 1968 symposium in London some participants suggested that the term
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Many plasmids have been created over the years and researchers have given out plasmids to plasmid databases such as the non-profit organisations
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being the most studied and whose mechanism of replication is known. The circular plasmids can replicate using the θ model of replication (as in
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Stes, Elisabeth; Vandeputte, Olivier; Jaziri, Mondher; Holsters, Marcelle; Vereecke, Danny (2011). "A Successful Bacterial Coup d'État: How
3209: 1060:) DNA is fully intact with both strands uncut, and with an integral twist, resulting in a compact form. This can be modeled by twisting an 1370: 4609: 3072:"Persistent episomal transgene expression in liver following delivery of a scaffold/matrix attachment region containing non-viral vector" 1019:. The conformations are listed below in order of electrophoretic mobility (speed for a given applied voltage) from slowest to fastest: 803: 1094:. It is possible to purify certain fragments by cutting the bands out of the gel and dissolving the gel to release the DNA fragments. 174:
There are two types of plasmid integration into a host bacteria: Non-integrating plasmids replicate as with the top instance, whereas
3106: 1077:, but has unpaired regions that make it slightly less compact; this can result from excessive alkalinity during plasmid preparation. 2707:
Gualberto, José M.; Mileshina, Daria; Wallet, Clémentine; Niazi, Adnan Khan; Weber-Lotfi, Frédérique; Dietrich, André (May 2014).
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Harrison, PW; Lower, RP; Kim, NK; Young, JP (April 2010). "Introducing the bacterial 'chromid': not a chromosome, not a plasmid".
1038:(supercoils removed). This can be modeled by letting a twisted extension cord unwind and relax and then plugging it into itself. 4176: 1162:. One can find and request plasmids from those databases for research. Researchers also often upload plasmid sequences to the 4684: 2917: 2894: 2461:
Van Craenenbroeck K, Vanhoenacker P, Haegeman G (September 2000). "Episomal vectors for gene expression in mammalian cells".
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plasmids). In either case, episomes remain physically separate from host cell chromosomes. Several cancer viruses, including
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Haase R, Argyros O, Wong SP, Harbottle RP, Lipps HJ, Ogris M, Magnusson T, Vizoso Pinto MG, Haas J, Baiker A (March 2010).
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Wickner RB, Hinnebusch A, Lambowitz AM, Gunsalus IC, Hollaender A, eds. (1987). "Mitochondrial and Chloroplast Plasmids".
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Many commercial kits have been created to perform plasmid extraction at various scales, purity, and levels of automation.
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Plasmid DNA may appear in one of five conformations, which (for a given size) run at different speeds in a gel during
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In order for plasmids to replicate independently within a cell, they must possess a stretch of DNA that can act as an
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naturally harbour various plasmids. Notable among them are 2 μm plasmids—small circular plasmids often used for
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from the inserted gene. This is a cheap and easy way of mass-producing the protein the gene codes for, for example,
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Because of its tight conformation, supercoiled DNA migrates faster through a gel than linear or open-circular DNA.
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and a plasmid, found in about 10% of bacterial species sequenced by 2009. These elements carry core genes and have
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and can replicate independently. They are most commonly found as small circular, double-stranded DNA molecules in
1760: 1222: 619: 259: 1709:"Active stable maintenance functions in low copy-number plasmids of Gram-positive bacteria I. Partition systems" 4527: 3877: 3472: 3022: 2530: 1146:, and WebDSV. These pieces of software help conduct entire experiments in silico before doing wet experiments. 2748:"Unique Features of the Mitochondrial Rolling Circle-Plasmid mp1 from the Higher Plant Chenopodium Album (L.)" 993: 4515: 4013: 2082: 717: 487:
to allow the bacterial cells to replicate the plasmid DNA, and a suitable site for cloning (referred to as a
452:, the bacterium synchronizes the replication of the chromosome and chromid by a conserved genome size ratio. 2938:"A vector based on the SV40 origin of replication and chromosomal S/MARs replicates episomally in CHO cells" 2496:
Colosimo A, Goncz KK, Holmes AR, Kunzelmann K, Novelli G, Malone RW, Bennett MJ, Gruenert DC (August 2000).
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Argyros O, Wong SP, Niceta M, Waddington SN, Howe SJ, Coutelle C, Miller AD, Harbottle RP (December 2008).
3008:"Replicating minicircles: Generation of nonviral episomes for the efficient modification of dividing cells" 2181: 2142: 579: 3347: 1338: 326:
transfer. They can parasitize a conjugative plasmid, transferring at high frequency only in its presence.
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or antibacterial agents. Historically known as R-factors, before the nature of plasmids was understood.
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Gonçalves GA, Oliveira PH, Gomes AG, Prather KL, Lewis LA, Prazeres DM, Monteiro GA (August 2014).
1507: 965: 688: 252: 119: 106:, units of DNA capable of replicating autonomously within a suitable host. However, plasmids, like 17: 114:. Plasmids are transmitted from one bacterium to another (even of another species) mostly through 4621: 3756: 3532: 2810: 2708: 1965:"Functionality of Two Origins of Replication in Vibrio cholerae Strains With a Single Chromosome" 654: 4669: 3984: 3300: 2979:
Bode J, Fetzer CP, Nehlsen K, Scinteie M, Hinrichsen BH, Baiker A, et al. (January 2001).
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sequences within host organisms. In the laboratory, plasmids may be introduced into a cell via
2905: 2549:"Unique type of plasmid maintenance function: postsegregational killing of plasmid-free cells" 2435: 2408: 2220: 1808: 3744: 3717: 3332: 2789: 2249: 1835: 1679: 1599: 1130:, and to plan manipulations. Examples of software packages that handle plasmid maps are ApE, 713: 571: 488: 484: 346: 318: 187: 115: 72: 3320: 2379: 1863: 1546: 126:. Unlike viruses, which encase their genetic material in a protective protein coat called a 4631: 3688: 3683: 3559: 3136:"pEPito: a significantly improved non-viral episomal expression vector for mammalian cells" 2560: 1247: 1044:
DNA has free ends, either because both strands have been cut or because the DNA was linear
885: 794:(bacterial phage viruses). Others replicate through a bidirectional replication mechanism ( 680: 274: 52: 1384:
Sinkovics J, Horvath J, Horak A (1998). "The origin and evolution of viruses (a review)".
8: 4206: 3924: 3766: 3722: 3678: 3416: 3126: 1127: 1091: 989: 919: 880: 778:, but some are plasmids. Other examples include aberrant chromosomal fragments, such as 691:. Plasmids encoding ZFN could help deliver a therapeutic gene to a specific site so that 684: 600: 501: 496: 471: 419: 415: 411: 298: 236: 191: 102: 78: 2564: 2143:"Marker-free plasmids for biotechnological applications – implications and perspectives" 1777: 1469: 1048:. This can be modeled with an electrical extension cord that is not plugged into itself. 4500: 4422: 3974: 3162: 3135: 2632: 2607: 2334: 2123: 2063: 1991: 1964: 1655: 1628: 1437: 1412: 1262: 1087: 997: 799: 3201: 2962: 2937: 2811:"Linear plasmids in plant mitochondria: Peaceful coexistences or malicious invasions?" 2772: 2747: 2681: 2656: 2583: 2548: 1896: 4478: 4394: 4296: 4066: 3969: 3673: 3167: 3118: 3093: 3054: 2967: 2913: 2890: 2830: 2777: 2728: 2686: 2637: 2623: 2588: 2522: 2478: 2474: 2441: 2414: 2387: 2361: 2326: 2282: 2257: 2228: 2201: 2162: 2115: 2055: 1996: 1945: 1910: 1900: 1843: 1814: 1789: 1781: 1736: 1728: 1687: 1660: 1607: 1554: 1520: 1473: 1442: 1411:
Smillie C, Garcillán-Barcia MP, Francia MV, Rocha EP, de la Cruz F (September 2010).
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Esser K, Kück U, Lang-Hinrichs C, Lemke P, Osiewacz HD, Stahl U, Tudzynski P (1986).
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which promote sexual conjugation between different cells. In the complex process of
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Other types of plasmids are often related to yeast cloning vectors that include:
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infections) can also occur. Some episomes, such as herpesviruses, replicate in a
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be abandoned, although others continued to use the term with a shift in meaning.
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so that it may express the protein that is lacking in the cells. Some forms of
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Proceedings of the National Academy of Sciences of the United States of America
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Illustration of a bacterium showing chromosomal DNA and plasmids (Not to scale)
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A plasmid cloning vector is typically used to clone DNA fragments of up to 15
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Another way to classify plasmids is by function. There are five main classes:
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Ehrhardt A, Haase R, Schepers A, Deutsch MJ, Lipps HJ, Baiker A (June 2008).
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Degradative plasmids, which enable the digestion of unusual substances, e.g.
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Resistance (R) plasmids, which contain genes that provide resistance against
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necessary for their own transfer. Plasmids vary in size from 1 to over 400 k
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International Society for Plasmid Biology and other Mobile Genetic Elements
3171: 3122: 3097: 3058: 2953: 2834: 2763: 2732: 2641: 2608:"Plasmid addiction systems: perspectives and applications in biotechnology" 2526: 2482: 2365: 2330: 2205: 2166: 2119: 2059: 2000: 1949: 1793: 1740: 1708: 1664: 1553:. Methods in Molecular Biology. Vol. 235. Humana Press. pp. 1–5. 1524: 1446: 1159: 775: 771: 664: 660: 611: 544: 2971: 2912:(3rd ed.). Chichester, West Sussex, England: Wiley. pp. 101–11. 2781: 2690: 2592: 1914: 1724: 1645: 1428: 1397: 410:
Although most plasmids are double-stranded DNA molecules, some consist of
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Jacob F, Wollman EL (1958), "Les épisomes, elements génétiques ajoutés",
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Kroll J, Klinter S, Schneider C, Voss I, Steinbüchel A (November 2010).
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Plasmids may also be used for gene transfer as a potential treatment in
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This article is about the DNA molecule. For the physics phenomenon, see
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DNA is fully intact with both strands uncut but has been enzymatically
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to generate multiple virus particles, they generally activate cellular
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of a DNA fiber bundle, presumably of a single bacterial chromosome loop
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Lederberg J (October 1952). "Cell genetics and hereditary symbiosis".
1196: 944:). Linear plasmids have been identified in some plant species such as 97:. Synthetic plasmids are available for procurement over the internet. 4243: 4222: 4124: 3916: 3901: 3888: 3640: 3428: 3259: 2460: 1686:(First ed.). Osney, Oxford OX: Wiley-Blackwell. pp. 21–22. 1252: 1139: 807: 607: 338: 190:. The self-replicating unit, in this case, the plasmid, is called a 135: 118:. This host-to-host transfer of genetic material is one mechanism of 68: 2277:
Kandavelou K, Chandrasegaran S (2008). "Plasmids for Gene Therapy".
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Oliveira PH, Prather KJ, Prazeres DM, Monteiro GA (September 2009).
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Electron micrograph of a bacterial DNA plasmid (chromosome fragment)
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Piechaczek C, Fetzer C, Baiker A, Bode J, Lipps HJ (January 1999).
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resistance or resistance to heavy metal, while others may produce
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Oliveira PH, Prather KJ, Prazeres DM, Monteiro GA (August 2010).
729: 642: 512:. Therefore, the reduction or complete elimination of extraneous 432: 402:
Plasmids can belong to more than one of these functional groups.
375: 368: 204: 64: 321:, plasmids may be transferred from one bacterium to another via 305: 4594: 4537: 4522: 4472: 4202: 4020: 3998: 3695: 3618: 3613: 3378: 3269: 3264: 2179: 2031: 1339:"GenBrick Gene Synthesis - Long DNA Sequences | GenScript" 847: 676: 615: 524: 448: 195: 127: 1166:, from which sequences of specific plasmids can be retrieved. 286: 4571: 4198: 4142: 4137: 3502: 3494: 3312: 3274: 2848: 2706: 2498:"Transfer and expression of foreign genes in mammalian cells" 2495: 2080: 956: 876: 840:(host killing/suppressor of killing) system of plasmid R1 in 107: 3105:
Wong SP, Argyros O, Coutelle C, Harbottle RP (August 2009).
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Chromids are elements that exist at the boundary between a
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sequence of plasmid vectors, help to predict cut sites of
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plasmid, one of the first plasmids to be used widely as a
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Smyth C, Leigh RJ, Delaney S, Murphy RA, Walsh F (2022).
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molecule within a cell that is physically separated from
2745: 2406: 2276: 2021:. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory. 3231: 3186: 1680:"Chapter 1 – The Function and Organization of Plasmids" 1626: 1547:"Chapter 1 – The Function and Organization of Plasmids" 960:, etc. but are rarer than their circular counterparts. 836:
or postsegregational killing system (PSK), such as the
531:. Shown on the plasmid diagram are the genes encoded ( 2304:"What history tells us XIX. The notion of the episome" 1881:
Brown GG, Finnegan PM (January 1989). "RNA plasmids".
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Plasmids of Eukaryotes: fundamentals and Applications
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resistance respectively), its origin of replication (
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Virulence plasmids, which turn the bacterium into a
3107:"Strategies for the episomal modification of cells" 2875: 1460:Thomas CM, Summers D (2008). "Bacterial Plasmids". 716:, have enabled the creation of a new generation of 483:is most frequently used for bacterial strains), an 138:, and the number of identical plasmids in a single 2354:Comptes Rendus de l'Académie des Sciences de Paris 2884: 2702: 2700: 2254:E. Coli Plasmid Vectors: Methods and Applications 2140: 2007: 1551:E. Coli Plasmid Vectors: Methods and Applications 466:Artificially constructed plasmids may be used as 178:, the lower example, can integrate into the host 165: 71:. Plasmids often carry useful genes, such as for 4661: 3005: 1836:"Chapter 2: The Development of Plasmid Vectors." 1833: 1707:Dmowski, Michał; Jagura-Burdzy, Grazyna (2013). 1453: 363:Col plasmids, which contain genes that code for 2016: 918:The mitochondria of many higher plants contain 913: 2697: 2437:Introduction to Genetics: A Molecular Approach 2413:. CIBA Foundation Symposium. pp. 244–45. 2227:(2nd ed.). Wiley-Blackwell. p. 248. 1806: 1604:Gene Cloning and DNA Analysis: An Introduction 574:or polylinker which has several commonly used 4047: 3217: 1880: 1540: 1538: 1536: 1534: 1459: 1386:Acta Microbiologica et Immunologica Hungarica 1315:Extrachromosomal Elements in Lower Eukaryotes 63:; however, plasmids are sometimes present in 2794:: CS1 maint: multiple names: authors list ( 2746:Backert, Meißner, Börner (1 February 1997). 2655:Gunge N, Murata K, Sakaguchi K (July 1982). 2547:Gerdes K, Rasmussen PB, Molin S (May 1986). 2351: 2279:Plasmids: Current Research and Future Trends 1813:(2nd ed.). Academic Cell. p. 795. 1317:. Boston, MA: Springer US. pp. 81–146. 859:the overall productivity could be enhanced. 832:Some plasmids or microbial hosts include an 818:defense mechanisms that kill the host cell. 683:(ZFNs) offer a way to cause a site-specific 281: 4610:Reverse transcriptase-related cellular gene 2386:. CIBA Foundation Symposium. pp. 4–8. 2141:Oliveira PH, Mairhofer J (September 2013). 1747: 4054: 4040: 3224: 3210: 2407:Wolstenholme GE, O'Connor M, eds. (1969). 2270: 1874: 1531: 1417:Microbiology and Molecular Biology Reviews 846:. This variant produces both a long-lived 122:, and plasmids are considered part of the 3161: 3151: 3111:Current Opinion in Molecular Therapeutics 3087: 2961: 2771: 2680: 2631: 2582: 2572: 2516: 2382:. In Wolstenholme GE, O'Connor M (eds.). 2218: 2109: 2049: 1990: 1980: 1654: 1644: 1506: 1492: 1436: 1142:, pDraw32, Serial Cloner, VectorFriends, 976: 2876:Klein DW, Prescott LM, Harley J (1999). 1593: 1591: 1589: 518: 304: 293: 285: 169: 38: 4591:Retroelements not elsewhere classified 2885:Moat AG, Foster JW, Spector MP (2002). 2301: 2250:"Chapter 2 – Choosing a Cloning Vector" 2247: 1840:Genetic Methods for Diverse Prokaryotes 1834:Radnedge L, Richards H (January 1999). 1677: 883:of yeast—and linear pGKL plasmids from 804:Kaposi's sarcoma-associated herpesvirus 154:was introduced in 1952 by the American 14: 4662: 2906:"Chapter 5: Manipulating Biomolecules" 2090:Applied Microbiology and Biotechnology 2038:Applied Microbiology and Biotechnology 2019:Molecular cloning: a laboratory manual 1149: 1111:The use of plasmids as a technique in 1101:Software for bioinformatics and design 985:, plasmids often need to be isolated. 821: 203:plasmids are sometimes referred to as 89:, serving to drive the replication of 4035: 3205: 2903: 2808: 2433: 2377: 2212: 1956: 1864:"Plasmids 101: Origin of Replication" 1597: 1586: 1544: 866: 667:require the insertion of therapeutic 629: 1107:List of genetic engineering software 994:miniprep to the maxiprep or bulkprep 971: 255:or partition function of a plasmid. 142:can range from one up to thousands. 4543:Integrative and conjugative element 3035:"Episomal vectors for gene therapy" 3006:Nehlsen K, Broll S, Bode J (2006). 2223:. In Streips UN, Yasbin RE (eds.). 1778:10.1146/annurev-phyto-072910-095217 1470:10.1002/9780470015902.a0000468.pub2 1371:"Invitrogen GeneArt Gene Synthesis" 24: 2988:Gene Therapy and Molecular Biology 2910:Elements of Molecular Neurobiology 2863: 1838:. In Smith MC, Sockett RE (eds.). 1573: 695:, cancer-causing mutations, or an 610:. To clone longer lengths of DNA, 523:A schematic representation of the 110:, are not generally classified as 25: 4701: 4600:Diversity-generating retroelement 3197:History of Plasmids with timeline 3180: 2511:(2): 314–18, 320–22, 324 passim. 2380:"What are episomes and plasmids?" 2252:. In Casali N, Preston A (eds.). 1606:(6th ed.). Wiley-Blackwell. 1134:, GeneConstructionKit, Geneious, 1064:and then plugging it into itself. 1000:and for some cloning techniques. 871: 702: 290:Overview of bacterial conjugation 4605:Telomerase reverse transcriptase 4177:Microbes with highly unusual DNA 2868: 2809:Handa, Hirokazu (January 2008). 2624:10.1111/j.1751-7915.2010.00170.x 2475:10.1046/j.1432-1327.2000.01645.x 2463:European Journal of Biochemistry 2440:. Garland Science. p. 238. 1884:International Review of Cytology 1549:. In Casali N, Presto A (eds.). 1207: 1195: 1183: 1010: 992:from bacteria, ranging from the 620:bacterial artificial chromosomes 504:and rearrangements, activation, 349:and result in the expression of 27:Small DNA molecule within a cell 2841: 2802: 2739: 2648: 2599: 2540: 2489: 2454: 2427: 2410:Bacterial Episomes and Plasmids 2400: 2384:Bacterial Episomes and Plasmids 2371: 2345: 2295: 2241: 2173: 2134: 2074: 2025: 2017:Russell DW, Sambrook J (2001). 1921: 1856: 1827: 1807:Clark DP, Pazdernik NJ (2012). 1800: 1761:Annual Review of Phytopathology 1700: 1671: 1620: 1567: 1223:Bacterial artificial chromosome 907:Yeast Replicative Plasmid (YRp) 901:Yeast integrative plasmid (YIp) 648: 508:or inactivation of neighboring 405: 260:Regulatory region of repBA gene 251:, are often referred to as the 4528:Defective interfering particle 3878:Last universal common ancestor 3473:Defective interfering particle 1758:Redirects Plant Development". 1713:Polish Journal of Microbiology 1486: 1404: 1377: 1363: 1345: 1331: 1306: 1281: 712:recombination techniques, and 675:target sites within the human 578:to which DNA fragments may be 166:Properties and characteristics 13: 1: 4516:Clonally transmissible cancer 4014:Clonally transmissible cancer 3450:Satellite-like nucleic acids 2928: 2673:10.1128/JB.151.1.462-464.1982 2198:10.1016/j.tibtech.2009.06.004 2159:10.1016/j.tibtech.2013.06.001 1897:10.1016/s0074-7696(08)61333-9 1517:10.1152/physrev.1952.32.4.403 1462:Encyclopedia of Life Sciences 1274: 988:There are several methods to 718:isogenic human disease models 614:with lysogeny genes deleted, 371:that can kill other bacteria. 4685:Molecular biology techniques 2725:10.1016/j.biochi.2013.09.016 1122:. These programs record the 1086:end through the gel matrix. 914:Plant mitochondrial plasmids 687:to the DNA genome and cause 624:yeast artificial chromosomes 7: 4069:, and comparable structures 2849:"Vector NTI feedback video" 2302:Morange M (December 2009). 1357:Integrated DNA Technologies 1353:"Gene synthesis | IDT" 1292:. Berlin: Springer-Verlag. 1169: 889:, that are responsible for 723: 586:. These plasmids contain a 426: 345:genes. They are capable of 10: 4706: 3570:Class II or DNA transposon 3565:Class I or retrotransposon 3051:10.2174/156652308784746440 2880:. Boston: WCB/McGraw-Hill. 2827:10.1016/j.mito.2007.10.002 2281:. Caister Academic Press. 1104: 1058:covalently closed-circular 938:rolling circle replication 825: 727: 652: 633: 563: 559: 462:Vector (molecular biology) 459: 455: 430: 257: 145: 29: 4491: 4465: 4432: 4288: 4274: 4267: 4214: 4197: 4190: 4158: 4123: 4081: 4074: 3940: 3883:Earliest known life forms 3868: 3781: 3757:Repeated sequences in DNA 3649: 3531: 3520: 3493: 3465: 3415: 3404: 3377: 3366: 3311: 3240: 2323:10.1007/s12038-009-0098-z 2225:Modern Microbial Genetics 2102:10.1007/s00253-014-5695-6 2051:10.1007/s00253-010-2671-7 1969:Frontiers in Microbiology 1942:10.1016/j.tim.2009.12.010 780:double minute chromosomes 396:Agrobacterium tumefaciens 282:Classifications and types 4690:Prokaryotic cell anatomy 4533:Endogenous viral element 3730:Endogenous viral element 3548:Horizontal gene transfer 3021:: 233–44. Archived from 2221:"Molecular Applications" 1982:10.3389/fmicb.2018.02932 1138:, LabGenius, Lasergene, 966:horizontal gene transfer 757:Today, some authors use 689:homologous recombination 120:horizontal gene transfer 100:Plasmids are considered 4675:Mobile genetic elements 3427:dsDNA satellite virus ( 3153:10.1186/1472-6750-10-20 2994:: 33–46. Archived from 2661:Journal of Bacteriology 2612:Microbial Biotechnology 2574:10.1073/pnas.83.10.3116 2186:Trends in Biotechnology 2147:Trends in Biotechnology 1684:The Biology of Plasmids 1028:DNA has one strand cut. 968:from pathogenic fungi. 655:Vectors in gene therapy 268:form are unknown among 132:conjugative "sex" pilus 3985:Helper dependent virus 3301:Biological dark matter 2942:Nucleic Acids Research 2752:Nucleic Acids Research 2311:Journal of Biosciences 1930:Trends in Microbiology 1413:"Mobility of plasmids" 977:Plasmid DNA extraction 790:mechanism, similar to 710:adeno-associated virus 556: 310: 302: 291: 183: 44: 3745:Endogenous retrovirus 3718:Origin of replication 3434:ssDNA satellite virus 3424:ssRNA satellite virus 3192:What is Biotechnology 3129:on 17 September 2011. 3065:on 26 September 2011. 1725:10.33073/pjm-2013-001 1646:10.1099/mgen.0.000858 1495:Physiological Reviews 1429:10.1128/MMBR.00020-10 762:eukaryotes, the term 714:zinc finger nucleases 681:Zinc finger nucleases 572:multiple cloning site 522: 489:multiple cloning site 485:origin of replication 460:Further information: 308: 297: 289: 258:Further information: 188:origin of replication 173: 73:antibiotic resistance 42: 4632:Transposable element 4622:Spiegelman's Monster 3689:Secondary chromosome 3684:Extrachromosomal DNA 3560:Transposable element 3039:Current Gene Therapy 2954:10.1093/nar/27.2.426 2887:Microbial Physiology 2764:10.1093/nar/25.3.582 2219:Geoghegan T (2002). 1756:Rhodococcus fascians 1580:Microbiology Society 1248:Secondary chromosome 1025:Nicked open-circular 886:Kluyveromyces lactis 555:(indicated in blue). 275:Rhodococcus fascians 272:with one exception, 69:eukaryotic organisms 53:extrachromosomal DNA 3925:Model lipid bilayer 3767:Interspersed repeat 3089:10.1038/gt.2008.113 2565:1986PNAS...83.3116G 1678:Summers DK (1996). 1150:Plasmid collections 1128:restriction enzymes 1092:gel electrophoresis 1088:Restriction digests 990:isolate plasmid DNA 881:genetic engineering 822:Plasmid maintenance 685:double-strand break 601:plasmid preparation 497:genetic instability 472:genetic engineering 416:double-stranded RNA 414:, or predominantly 412:single-stranded DNA 299:Electron micrograph 237:plasmid copy number 156:molecular biologist 81:are widely used as 79:Artificial plasmids 4501:Bio-like structure 4423:Tolecusatellitidae 3235:organic structures 3015:Gene Ther Mol Biol 2248:Preston A (2003). 1633:Microbial Genomics 1263:Triparental mating 1073:DNA is similar to 998:restriction digest 867:Plasmids in nature 850:and a short-lived 800:Epstein-Barr virus 738:was introduced by 630:Protein production 557: 311: 303: 292: 184: 45: 4680:Molecular biology 4657: 4656: 4487: 4486: 4461: 4460: 4457: 4456: 4395:Portogloboviridae 4297:Alphasatellitidae 4191:Non-cellular life 4186: 4185: 4067:non-cellular life 4029: 4028: 3970:Non-cellular life 3777: 3776: 3516: 3515: 3489: 3488: 3443:ssRNA satellite ( 3140:BMC Biotechnology 2919:978-0-470-85717-5 2904:Smith CU (2002). 2896:978-0-471-39483-9 2518:10.2144/00292rv01 2434:Brown TA (2011). 2288:978-1-904455-35-6 2263:978-1-58829-151-6 1906:978-0-12-364517-3 1849:978-0-12-652340-9 1810:Molecular Biology 1693:978-0-632-03436-9 1598:Brown TA (2010). 1560:978-1-58829-151-6 1479:978-0-470-01617-6 1324:978-1-4684-5251-8 1299:978-3-540-15798-4 1233:DNA recombination 1113:molecular biology 983:molecular cloning 972:Study of plasmids 929:Chenopodium album 891:killer phenotypes 812:lytic replication 636:Expression vector 588:selectable marker 576:restriction sites 553:restriction sites 217:virulence factors 87:molecular cloning 16:(Redirected from 4697: 4272: 4271: 4212: 4211: 4195: 4194: 4079: 4078: 4056: 4049: 4042: 4033: 4032: 3706:Gene duplication 3529: 3528: 3525:self-replication 3413: 3412: 3375: 3374: 3233:Self-replicating 3226: 3219: 3212: 3203: 3202: 3175: 3165: 3155: 3130: 3125:. Archived from 3101: 3091: 3082:(24): 1593–605. 3066: 3061:. Archived from 3029: 3027: 3012: 3002: 3000: 2985: 2975: 2965: 2923: 2900: 2881: 2857: 2856: 2845: 2839: 2838: 2806: 2800: 2799: 2793: 2785: 2775: 2743: 2737: 2736: 2704: 2695: 2694: 2684: 2652: 2646: 2645: 2635: 2603: 2597: 2596: 2586: 2576: 2544: 2538: 2537: 2536:on 24 July 2011. 2535: 2529:. Archived from 2520: 2502: 2493: 2487: 2486: 2458: 2452: 2451: 2431: 2425: 2424: 2404: 2398: 2397: 2378:Hayes W (1969). 2375: 2369: 2368: 2349: 2343: 2342: 2308: 2299: 2293: 2292: 2274: 2268: 2267: 2245: 2239: 2238: 2216: 2210: 2209: 2177: 2171: 2170: 2138: 2132: 2131: 2113: 2087: 2078: 2072: 2071: 2053: 2029: 2023: 2022: 2014: 2005: 2004: 1994: 1984: 1960: 1954: 1953: 1925: 1919: 1918: 1878: 1872: 1871: 1860: 1854: 1853: 1831: 1825: 1824: 1804: 1798: 1797: 1751: 1745: 1744: 1704: 1698: 1697: 1675: 1669: 1668: 1658: 1648: 1624: 1618: 1617: 1595: 1584: 1583: 1571: 1565: 1564: 1545:Hayes F (2003). 1542: 1529: 1528: 1510: 1490: 1484: 1483: 1457: 1451: 1450: 1440: 1408: 1402: 1401: 1381: 1375: 1374: 1367: 1361: 1360: 1349: 1343: 1342: 1335: 1329: 1328: 1310: 1304: 1303: 1285: 1212: 1211: 1200: 1199: 1188: 1187: 1179: 1115:is supported by 1032:Relaxed circular 920:self-replicating 843:Escherichia coli 834:addiction system 828:Addiction module 671:at pre-selected 341:, which contain 253:partition system 159:Joshua Lederberg 21: 4705: 4704: 4700: 4699: 4698: 4696: 4695: 4694: 4660: 4659: 4658: 4653: 4493: 4483: 4453: 4428: 4339:Finnlakeviridae 4284: 4263: 4205: 4201: 4182: 4154: 4119: 4070: 4060: 4030: 4025: 3975:Synthetic virus 3963:Artificial cell 3936: 3864: 3773: 3662:RNA replication 3657:DNA replication 3645: 3636:Group II intron 3534: 3524: 3512: 3503:Mammalian prion 3485: 3461: 3440:dsRNA satellite 3437:ssDNA satellite 3407: 3400: 3369: 3362: 3307: 3236: 3230: 3183: 3178: 3028:on 30 May 2009. 3025: 3010: 3001:on 30 May 2009. 2998: 2983: 2931: 2926: 2920: 2897: 2871: 2866: 2864:Further reading 2861: 2860: 2847: 2846: 2842: 2807: 2803: 2787: 2786: 2744: 2740: 2705: 2698: 2653: 2649: 2604: 2600: 2559:(10): 3116–20. 2545: 2541: 2533: 2500: 2494: 2490: 2469:(18): 5665–78. 2459: 2455: 2448: 2432: 2428: 2421: 2405: 2401: 2394: 2376: 2372: 2350: 2346: 2306: 2300: 2296: 2289: 2275: 2271: 2264: 2246: 2242: 2235: 2217: 2213: 2178: 2174: 2139: 2135: 2096:(15): 6609–19. 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3353:ssRNA-RT virus 3350: 3348:(−)ssRNA virus 3345: 3343:(+)ssRNA virus 3340: 3335: 3330: 3329: 3328: 3317: 3315: 3309: 3308: 3306: 3305: 3304: 3303: 3298: 3288:Incertae sedis 3284: 3283: 3282: 3277: 3272: 3267: 3257: 3252: 3246: 3244: 3238: 3237: 3229: 3228: 3221: 3214: 3206: 3200: 3199: 3194: 3189: 3182: 3181:External links 3179: 3177: 3176: 3131: 3102: 3067: 3030: 3003: 2976: 2932: 2930: 2927: 2925: 2924: 2918: 2901: 2895: 2889:. Wiley-Liss. 2882: 2872: 2870: 2867: 2865: 2862: 2859: 2858: 2840: 2801: 2758:(3): 582–589. 2738: 2696: 2647: 2598: 2539: 2488: 2453: 2447:978-0815365099 2446: 2426: 2420:978-0700014057 2419: 2399: 2393:978-0700014057 2392: 2370: 2344: 2294: 2287: 2269: 2262: 2240: 2234:978-0471386650 2233: 2211: 2172: 2133: 2073: 2044:(6): 2157–67. 2024: 2006: 1955: 1920: 1905: 1873: 1855: 1848: 1826: 1820:978-0123785947 1819: 1799: 1770:Annual Reviews 1746: 1699: 1692: 1670: 1619: 1613:978-1405181730 1612: 1585: 1566: 1559: 1530: 1508:10.1.1.458.985 1485: 1478: 1452: 1403: 1376: 1362: 1344: 1330: 1323: 1305: 1298: 1279: 1278: 1276: 1273: 1271: 1270: 1265: 1260: 1255: 1250: 1245: 1240: 1235: 1230: 1225: 1219: 1217: 1216: 1204: 1192: 1171: 1168: 1151: 1148: 1117:bioinformatics 1105:Main article: 1102: 1099: 1079: 1078: 1065: 1062:extension cord 1049: 1039: 1029: 1012: 1009: 978: 975: 973: 970: 953:Brassica napus 936:) and through 915: 912: 911: 910: 904: 873: 872:Yeast plasmids 870: 868: 865: 826:Main article: 823: 820: 792:bacteriophages 788:rolling circle 776:polyomaviruses 740:François Jacob 728:Main article: 725: 722: 704: 703:Disease models 701: 653:Main article: 650: 647: 634:Main article: 631: 628: 596:reporter genes 584:transformation 566:Cloning vector 564:Main article: 561: 558: 529:cloning vector 457: 454: 431:Main article: 428: 425: 407: 404: 400: 399: 383: 380:salicylic acid 372: 361: 354: 315:transfer genes 283: 280: 270:phytopathogens 230:minichromosome 167: 164: 147: 144: 95:transformation 26: 9: 6: 4: 3: 2: 4702: 4691: 4688: 4686: 4683: 4681: 4678: 4676: 4673: 4671: 4670:Gene delivery 4668: 4667: 4665: 4650: 4647: 4645: 4642: 4638: 4635: 4634: 4633: 4630: 4628: 4627:Tandem repeat 4625: 4623: 4620: 4618: 4615: 4611: 4608: 4606: 4603: 4601: 4598: 4596: 4593: 4592: 4590: 4588: 4585: 4582: 4578: 4575: 4574: 4573: 4570: 4568: 4565: 4563: 4560: 4557: 4556: 4555:Nanobacterium 4551: 4549: 4546: 4544: 4541: 4539: 4536: 4534: 4531: 4529: 4526: 4524: 4521: 4517: 4514: 4512: 4509: 4508: 4507: 4504: 4502: 4499: 4498: 4496: 4490: 4480: 4477: 4474: 4471: 4470: 4468: 4464: 4450: 4449: 4448:Rhizidiovirus 4445: 4443: 4442: 4438: 4437: 4435: 4431: 4425: 4424: 4420: 4418: 4417: 4416:Thaspiviridae 4413: 4411: 4410: 4406: 4404: 4403: 4402:Pospiviroidae 4399: 4397: 4396: 4392: 4390: 4389: 4385: 4383: 4382: 4381:Plasmaviridae 4378: 4376: 4375: 4371: 4369: 4368: 4367:Halspiviridae 4364: 4362: 4361: 4357: 4355: 4354: 4350: 4348: 4347: 4343: 4341: 4340: 4336: 4334: 4333: 4329: 4327: 4326: 4322: 4320: 4319: 4318:Avsunviroidae 4315: 4313: 4312: 4311:Anelloviridae 4308: 4306: 4305: 4301: 4299: 4298: 4294: 4293: 4291: 4287: 4283: 4282: 4277: 4273: 4270: 4266: 4260: 4259: 4255: 4253: 4252: 4248: 4246: 4245: 4241: 4239: 4238: 4234: 4232: 4231: 4230:Duplodnaviria 4227: 4225: 4224: 4220: 4219: 4217: 4213: 4210: 4208: 4204: 4200: 4196: 4193: 4189: 4178: 4175: 4173: 4172: 4168: 4167: 4165: 4163: 4162: 4157: 4150: 4146: 4144: 4141: 4139: 4136: 4134: 4131: 4130: 4128: 4126: 4122: 4116: 4113: 4109: 4106: 4104: 4103:Mitochondrion 4101: 4100: 4099: 4096: 4094: 4091: 4090: 4088: 4085: 4080: 4077: 4075:Cellular life 4073: 4068: 4064: 4057: 4052: 4050: 4045: 4043: 4038: 4037: 4034: 4022: 4019: 4015: 4012: 4010: 4007: 4006: 4005: 4002: 4000: 3996: 3994: 3993:Nanobacterium 3990: 3986: 3983: 3981: 3978: 3977: 3976: 3973: 3971: 3968: 3964: 3961: 3959: 3958:Cell division 3956: 3955: 3954: 3951: 3949: 3946: 3945: 3943: 3939: 3931: 3928: 3926: 3923: 3922: 3920: 3918: 3915: 3913: 3910: 3908: 3905: 3903: 3899: 3895: 3892: 3891: 3890: 3886: 3884: 3881: 3879: 3876: 3875: 3873: 3871: 3867: 3861: 3858: 3854: 3851: 3849: 3846: 3845: 3843: 3841: 3838: 3834: 3831: 3829: 3826: 3824: 3821: 3819: 3816: 3814: 3811: 3810: 3809: 3806: 3802: 3801:Hydrogenosome 3799: 3797: 3794: 3793: 3792: 3791:Mitochondrion 3789: 3788: 3786: 3784: 3783:Endosymbiosis 3780: 3768: 3765: 3763: 3762:Tandem repeat 3760: 3759: 3758: 3755: 3751: 3748: 3746: 3743: 3741: 3738: 3736: 3733: 3732: 3731: 3728: 3724: 3721: 3720: 3719: 3716: 3712: 3709: 3707: 3704: 3702: 3699: 3698: 3697: 3694: 3690: 3687: 3685: 3682: 3680: 3677: 3675: 3672: 3671: 3670: 3667: 3663: 3660: 3659: 3658: 3655: 3654: 3652: 3650:Other aspects 3648: 3642: 3639: 3637: 3634: 3632: 3629: 3627: 3624: 3620: 3617: 3616: 3615: 3612: 3607: 3605: 3601: 3598: 3595: 3593: 3590: 3588: 3585: 3583: 3580: 3579: 3578: 3575: 3571: 3568: 3566: 3563: 3562: 3561: 3558: 3554: 3551: 3549: 3546: 3545: 3544: 3541: 3540: 3538: 3536: 3530: 3527: 3523: 3519: 3509: 3506: 3504: 3501: 3500: 3498: 3496: 3492: 3479: 3476: 3475: 3474: 3471: 3470: 3468: 3464: 3455: 3452: 3451: 3449: 3446: 3442: 3439: 3436: 3433: 3430: 3426: 3423: 3422: 3420: 3418: 3414: 3411: 3409: 3403: 3397: 3396: 3395:Avsunviroidae 3392: 3390: 3389: 3388:Pospiviroidae 3385: 3384: 3382: 3380: 3376: 3373: 3371: 3365: 3359: 3356: 3354: 3351: 3349: 3346: 3344: 3341: 3339: 3336: 3334: 3331: 3327: 3324: 3323: 3322: 3319: 3318: 3316: 3314: 3310: 3302: 3299: 3297: 3296: 3292: 3291: 3290: 3289: 3285: 3281: 3278: 3276: 3273: 3271: 3268: 3266: 3263: 3262: 3261: 3258: 3256: 3253: 3251: 3248: 3247: 3245: 3243: 3242:Cellular life 3239: 3234: 3227: 3222: 3220: 3215: 3213: 3208: 3207: 3204: 3198: 3195: 3193: 3190: 3188: 3185: 3184: 3173: 3169: 3164: 3159: 3154: 3149: 3145: 3141: 3137: 3132: 3128: 3124: 3120: 3117:(4): 433–41. 3116: 3112: 3108: 3103: 3099: 3095: 3090: 3085: 3081: 3077: 3073: 3068: 3064: 3060: 3056: 3052: 3048: 3045:(3): 147–61. 3044: 3040: 3036: 3031: 3024: 3020: 3016: 3009: 3004: 2997: 2993: 2989: 2982: 2977: 2973: 2969: 2964: 2959: 2955: 2951: 2948:(2): 426–28. 2947: 2943: 2939: 2934: 2933: 2921: 2915: 2911: 2907: 2902: 2898: 2892: 2888: 2883: 2879: 2874: 2873: 2869:General works 2854: 2850: 2844: 2836: 2832: 2828: 2824: 2820: 2816: 2815:Mitochondrion 2812: 2805: 2797: 2791: 2783: 2779: 2774: 2769: 2765: 2761: 2757: 2753: 2749: 2742: 2734: 2730: 2726: 2722: 2718: 2714: 2710: 2703: 2701: 2692: 2688: 2683: 2678: 2674: 2670: 2667:(1): 462–64. 2666: 2662: 2658: 2651: 2643: 2639: 2634: 2629: 2625: 2621: 2618:(6): 634–57. 2617: 2613: 2609: 2602: 2594: 2590: 2585: 2580: 2575: 2570: 2566: 2562: 2558: 2554: 2550: 2543: 2532: 2528: 2524: 2519: 2514: 2510: 2506: 2505:BioTechniques 2499: 2492: 2484: 2480: 2476: 2472: 2468: 2464: 2457: 2449: 2443: 2439: 2438: 2430: 2422: 2416: 2412: 2411: 2403: 2395: 2389: 2385: 2381: 2374: 2367: 2363: 2360:(1): 154–56, 2359: 2355: 2348: 2340: 2336: 2332: 2328: 2324: 2320: 2317:(6): 845–48. 2316: 2312: 2305: 2298: 2290: 2284: 2280: 2273: 2265: 2259: 2255: 2251: 2244: 2236: 2230: 2226: 2222: 2215: 2207: 2203: 2199: 2195: 2192:(9): 503–11. 2191: 2187: 2183: 2176: 2168: 2164: 2160: 2156: 2153:(9): 539–47. 2152: 2148: 2144: 2137: 2129: 2125: 2121: 2117: 2112: 2111:1721.1/104375 2107: 2103: 2099: 2095: 2091: 2084: 2077: 2069: 2065: 2061: 2057: 2052: 2047: 2043: 2039: 2035: 2028: 2020: 2013: 2011: 2002: 1998: 1993: 1988: 1983: 1978: 1974: 1970: 1966: 1959: 1951: 1947: 1943: 1939: 1935: 1931: 1924: 1916: 1912: 1908: 1902: 1898: 1894: 1890: 1886: 1885: 1877: 1869: 1865: 1859: 1851: 1845: 1841: 1837: 1830: 1822: 1816: 1812: 1811: 1803: 1795: 1791: 1787: 1783: 1779: 1775: 1771: 1767: 1763: 1762: 1757: 1750: 1742: 1738: 1734: 1730: 1726: 1722: 1718: 1714: 1710: 1703: 1695: 1689: 1685: 1681: 1674: 1666: 1662: 1657: 1652: 1647: 1642: 1638: 1634: 1630: 1623: 1615: 1609: 1605: 1601: 1594: 1592: 1590: 1581: 1577: 1570: 1562: 1556: 1552: 1548: 1541: 1539: 1537: 1535: 1526: 1522: 1518: 1514: 1509: 1504: 1501:(4): 403–30. 1500: 1496: 1489: 1481: 1475: 1471: 1467: 1463: 1456: 1448: 1444: 1439: 1434: 1430: 1426: 1423:(3): 434–52. 1422: 1418: 1414: 1407: 1399: 1395: 1391: 1387: 1380: 1372: 1366: 1358: 1354: 1348: 1340: 1334: 1326: 1320: 1316: 1309: 1301: 1295: 1291: 1284: 1280: 1269: 1266: 1264: 1261: 1259: 1256: 1254: 1251: 1249: 1246: 1244: 1241: 1239: 1236: 1234: 1231: 1229: 1228:Bacteriophage 1226: 1224: 1221: 1220: 1215: 1210: 1205: 1203: 1198: 1193: 1191: 1186: 1181: 1180: 1177: 1167: 1165: 1164:NCBI database 1161: 1157: 1147: 1145: 1141: 1137: 1133: 1132:Clone Manager 1129: 1125: 1121: 1118: 1114: 1108: 1098: 1095: 1093: 1089: 1083: 1076: 1072: 1071: 1066: 1063: 1059: 1055: 1054: 1050: 1047: 1043: 1040: 1037: 1033: 1030: 1027: 1026: 1022: 1021: 1020: 1018: 1011:Conformations 1008: 1005: 1001: 999: 995: 991: 986: 984: 969: 967: 961: 959: 958: 954: 949: 948: 947:Beta vulgaris 943: 939: 935: 931: 930: 926: 921: 908: 905: 902: 899: 898: 897: 894: 892: 888: 887: 882: 878: 864: 860: 857: 853: 849: 845: 844: 839: 835: 829: 819: 817: 813: 809: 805: 801: 797: 793: 789: 785: 781: 777: 773: 769: 768:herpesviruses 765: 760: 755: 753: 749: 745: 741: 737: 731: 721: 719: 715: 711: 700: 698: 694: 690: 686: 682: 678: 674: 670: 666: 662: 656: 646: 644: 637: 627: 625: 621: 617: 613: 609: 604: 602: 597: 593: 589: 585: 581: 577: 573: 567: 554: 550: 546: 542: 538: 534: 530: 526: 521: 517: 515: 511: 507: 503: 498: 492: 490: 486: 482: 477: 473: 469: 463: 453: 451: 450: 444: 440: 434: 424: 421: 417: 413: 403: 398: 397: 392: 388: 384: 381: 377: 373: 370: 366: 362: 359: 355: 352: 348: 344: 340: 336: 335: 334: 331: 327: 324: 320: 316: 307: 300: 296: 288: 279: 277: 276: 271: 267: 261: 256: 254: 250: 249:parMRC system 246: 245:parABS system 242: 241:cell division 238: 233: 231: 225: 223: 218: 212: 210: 206: 201: 197: 193: 189: 181: 177: 172: 163: 160: 157: 153: 143: 141: 137: 133: 129: 125: 121: 117: 113: 109: 105: 104: 98: 96: 92: 88: 84: 80: 76: 74: 70: 66: 62: 58: 54: 50: 41: 37: 33: 19: 4644:Transpoviron 4577:Fungal prion 4566: 4553: 4446: 4441:Dinodnavirus 4439: 4421: 4414: 4409:Spiraviridae 4407: 4400: 4393: 4386: 4379: 4374:Ovaliviridae 4372: 4365: 4360:Guttaviridae 4358: 4351: 4344: 4337: 4332:Clavaviridae 4330: 4323: 4316: 4309: 4302: 4295: 4279: 4258:Varidnaviria 4256: 4249: 4242: 4237:Monodnaviria 4235: 4228: 4221: 4169: 4159: 3980:Viral vector 3823:Gerontoplast 3750:Transpoviron 3576: 3522:Nucleic acid 3508:Fungal prion 3406:Helper-virus 3393: 3386: 3293: 3286: 3143: 3139: 3127:the original 3114: 3110: 3079: 3076:Gene Therapy 3075: 3063:the original 3042: 3038: 3023:the original 3018: 3014: 2996:the original 2991: 2987: 2945: 2941: 2909: 2886: 2878:Microbiology 2877: 2852: 2843: 2821:(1): 15–25. 2818: 2814: 2804: 2790:cite journal 2755: 2751: 2741: 2716: 2712: 2664: 2660: 2650: 2615: 2611: 2601: 2556: 2552: 2542: 2531:the original 2508: 2504: 2491: 2466: 2462: 2456: 2436: 2429: 2409: 2402: 2383: 2373: 2357: 2353: 2347: 2314: 2310: 2297: 2278: 2272: 2253: 2243: 2224: 2214: 2189: 2185: 2175: 2150: 2146: 2136: 2093: 2089: 2076: 2041: 2037: 2027: 2018: 1972: 1968: 1958: 1936:(4): 141–8. 1933: 1929: 1923: 1888: 1882: 1876: 1867: 1858: 1839: 1829: 1809: 1802: 1765: 1759: 1755: 1749: 1716: 1712: 1702: 1683: 1673: 1636: 1632: 1622: 1603: 1579: 1569: 1550: 1498: 1494: 1488: 1461: 1455: 1420: 1416: 1406: 1389: 1385: 1379: 1365: 1356: 1347: 1333: 1314: 1308: 1289: 1283: 1153: 1110: 1096: 1084: 1080: 1074: 1068:Supercoiled 1067: 1057: 1051: 1045: 1041: 1035: 1031: 1023: 1014: 1006: 1002: 987: 980: 962: 951: 945: 941: 933: 923: 917: 906: 900: 895: 884: 875: 861: 841: 831: 795: 772:adenoviruses 763: 758: 756: 751: 747: 744:Élie Wollman 735: 733: 706: 699:is avoided. 665:gene therapy 661:gene therapy 658: 649:Gene therapy 639: 612:lambda phage 605: 592:marker genes 569: 548: 545:tetracycline 536: 532: 493: 465: 447: 436: 420:encapsidated 409: 406:RNA plasmids 401: 394: 365:bacteriocins 342: 332: 328: 312: 273: 265: 264:Plasmids of 263: 234: 226: 222:fix nitrogen 213: 185: 151: 149: 101: 99: 77: 51:is a small, 48: 46: 36: 4587:microsphere 4506:Cancer cell 4251:Ribozyviria 4004:Cancer cell 3870:Abiogenesis 3818:Chromoplast 3813:Chloroplast 3596:Degradative 3338:dsRNA virus 3333:ssDNA virus 3326:Giant virus 3321:dsDNA virus 2853:The DNA Lab 2719:: 107–120. 1868:addgene.org 1719:(1): 3–16. 1639:(8): 1–10. 1053:Supercoiled 693:cell damage 673:chromosomal 443:codon usage 358:antibiotics 347:conjugation 319:conjugation 209:prokaryotes 116:conjugation 4664:Categories 4637:Retroposon 4584:Proteinoid 4494:structures 4492:Comparable 4268:Unassigned 4171:Parakaryon 4084:Prokaryota 3912:Proteinoid 3907:Coacervate 3860:Nitroplast 3853:Trophosome 3848:Bacteriome 3833:Apicoplast 3828:Leucoplast 3669:Chromosome 3587:Resistance 3295:Parakaryon 1574:Falkow S. 1275:References 1258:Transposon 1238:Plasmidome 1214:Technology 1144:Vector NTI 934:Vicia faba 925:Vicia faba 856:literature 796:Theta type 626:are used. 541:ampicillin 481:ampicillin 439:chromosome 391:Ti plasmid 339:F-plasmids 337:Fertility 180:chromosome 4244:Riboviria 4223:Adnaviria 4207:Satellite 4125:Eukaryota 3921:Research 3902:Protocell 3641:Retrozyme 3600:Virulence 3582:Fertility 3429:Virophage 3417:Satellite 3408:dependent 3260:Eukaryota 2713:Biochimie 1786:0066-4286 1772:: 69–86. 1733:1733-1331 1503:CiteSeerX 1253:Segrosome 1160:BCCM/LMBP 1140:MacVector 1070:denatured 808:oncogenes 734:The term 514:noncoding 502:deletions 150:The term 103:replicons 4617:Ribozyme 4562:Phagemid 4289:Families 4149:Protista 4133:Animalia 4098:Bacteria 3948:Organism 3941:See also 3917:Sulphobe 3894:Ribozyme 3889:RNA life 3796:Mitosome 3740:Prophage 3735:Provirus 3723:Replicon 3679:Circular 3626:Phagemid 3543:Mobilome 3535:elements 3445:Virusoid 3368:Subviral 3280:Protista 3265:Animalia 3250:Bacteria 3172:20230618 3123:19649988 3098:18633447 3059:18537590 2929:Episomes 2835:18326073 2733:24075874 2642:21255361 2527:10948433 2483:10971576 2366:13561654 2339:11367145 2331:20093737 2206:19656584 2167:23830144 2120:24769900 2068:19780633 2060:20496146 2001:30559732 1975:: 2932. 1950:20080407 1891:: 1–56. 1794:21495844 1741:23829072 1665:35960657 1525:13003535 1447:20805406 1268:VectorDB 1243:Provirus 1170:See also 1120:software 957:Zea mays 852:antidote 784:poxvirus 724:Episomes 427:Chromids 387:pathogen 369:proteins 351:sex pili 323:sex pili 205:episomes 192:replicon 176:episomes 124:mobilome 61:bacteria 32:plasmoid 18:Plasmids 4649:Xenobot 4567:Plasmid 4548:Jeewanu 4479:Obelisk 4275:Classes 4143:Plantae 4108:Plastid 4093:Archaea 3930:Jeewanu 3844:Organs 3808:Plastid 3608:Cryptic 3577:Plasmid 3275:Plantae 3255:Archaea 3163:2847955 2972:9862961 2782:9016599 2691:7045080 2633:3815339 2593:3517851 2561:Bibcode 2128:9826684 1992:6284228 1915:2684889 1656:9484753 1438:2937521 1398:9873943 1202:Science 1190:Biology 1176:Portals 1156:Addgene 1046:in vivo 1036:relaxed 942:C.album 940:(as in 838:hok/sok 764:episome 759:episome 752:episome 748:plasmid 736:episome 730:Episome 643:insulin 616:cosmids 580:ligated 560:Cloning 476:express 468:vectors 456:Vectors 433:Chromid 389:. e.g. 376:toluene 196:iterons 152:plasmid 146:History 108:viruses 83:vectors 65:archaea 49:plasmid 4595:Retron 4538:Fosmid 4523:Cosmid 4473:Nanobe 4433:Genera 4215:Realms 4203:Viroid 4021:Virome 3999:Nanobe 3696:Genome 3674:Linear 3619:Fosmid 3614:Cosmid 3379:Viroid 3370:agents 3170:  3160:  3146:: 20. 3121:  3096:  3057:  2970:  2963:148196 2960:  2916:  2893:  2833:  2780:  2773:146482 2770:  2731:  2689:  2682:220260 2679:  2640:  2630:  2591:  2584:323463 2581:  2525:  2481:  2444:  2417:  2390:  2364:  2337:  2329:  2285:  2260:  2231:  2204:  2165:  2126:  2118:  2066:  2058:  1999:  1989:  1948:  1913:  1903:  1846:  1817:  1792:  1784:  1739:  1731:  1690:  1663:  1653:  1610:  1557:  1523:  1505:  1476:  1445:  1435:  1396:  1321:  1296:  1042:Linear 877:Yeasts 848:poison 774:, and 677:genome 525:pBR322 449:Vibrio 266:linear 128:capsid 4572:Prion 4466:Other 4199:Virus 4138:Fungi 3495:Prion 3466:Other 3313:Virus 3270:Fungi 3026:(PDF) 3011:(PDF) 2999:(PDF) 2984:(PDF) 2534:(PDF) 2501:(PDF) 2335:S2CID 2307:(PDF) 2124:S2CID 2086:(PDF) 2064:S2CID 1768:(1). 669:genes 622:, or 4511:HeLa 4115:LUCA 4063:Life 4009:HeLa 3953:Cell 3701:Gene 3168:PMID 3119:PMID 3094:PMID 3055:PMID 2968:PMID 2914:ISBN 2891:ISBN 2831:PMID 2796:link 2778:PMID 2729:PMID 2687:PMID 2638:PMID 2589:PMID 2523:PMID 2479:PMID 2442:ISBN 2415:ISBN 2388:ISBN 2362:PMID 2327:PMID 2283:ISBN 2258:ISBN 2229:ISBN 2202:PMID 2163:PMID 2116:PMID 2056:PMID 1997:PMID 1946:PMID 1911:PMID 1901:ISBN 1844:ISBN 1815:ISBN 1790:PMID 1782:ISSN 1737:PMID 1729:ISSN 1688:ISBN 1661:PMID 1608:ISBN 1555:ISBN 1521:PMID 1474:ISBN 1443:PMID 1394:PMID 1319:ISBN 1294:ISBN 1158:and 1056:(or 927:and 802:and 742:and 543:and 539:for 535:and 378:and 247:and 200:DnaA 140:cell 112:life 67:and 4475:(?) 4179:(?) 3592:Col 3480:DNA 3477:RNA 3456:DNA 3453:RNA 3158:PMC 3148:doi 3084:doi 3047:doi 2958:PMC 2950:doi 2823:doi 2768:PMC 2760:doi 2721:doi 2717:100 2677:PMC 2669:doi 2665:151 2628:PMC 2620:doi 2579:PMC 2569:doi 2513:doi 2471:doi 2467:267 2358:247 2319:doi 2194:doi 2155:doi 2106:hdl 2098:doi 2046:doi 1987:PMC 1977:doi 1938:doi 1893:doi 1889:117 1774:doi 1721:doi 1651:PMC 1641:doi 1513:doi 1466:doi 1433:PMC 1425:doi 1124:DNA 608:kbp 594:or 549:ori 537:tet 533:amp 491:). 470:in 393:in 343:tra 207:in 85:in 4666:: 4065:, 3604:Ti 3166:. 3156:. 3144:10 3142:. 3138:. 3115:11 3113:. 3109:. 3092:. 3080:15 3078:. 3074:. 3053:. 3041:. 3037:. 3019:10 3017:. 3013:. 2990:. 2986:. 2966:. 2956:. 2946:27 2944:. 2940:. 2908:. 2851:. 2829:. 2817:. 2813:. 2792:}} 2788:{{ 2776:. 2766:. 2756:25 2754:. 2750:. 2727:. 2715:. 2711:. 2699:^ 2685:. 2675:. 2663:. 2659:. 2636:. 2626:. 2614:. 2610:. 2587:. 2577:. 2567:. 2557:83 2555:. 2551:. 2521:. 2509:29 2507:. 2503:. 2477:. 2465:. 2356:, 2333:. 2325:. 2315:34 2313:. 2309:. 2200:. 2190:27 2188:. 2184:. 2161:. 2151:31 2149:. 2145:. 2122:. 2114:. 2104:. 2094:98 2092:. 2088:. 2062:. 2054:. 2042:87 2040:. 2036:. 2009:^ 1995:. 1985:. 1971:. 1967:. 1944:. 1934:18 1932:. 1909:. 1899:. 1887:. 1866:. 1788:. 1780:. 1766:49 1764:. 1735:. 1727:. 1717:62 1715:. 1711:. 1682:. 1659:. 1649:. 1635:. 1631:. 1602:. 1588:^ 1578:. 1533:^ 1519:. 1511:. 1499:32 1497:. 1472:. 1464:. 1441:. 1431:. 1421:74 1419:. 1415:. 1390:45 1388:. 1355:. 955:, 950:, 893:. 770:, 720:. 645:. 618:, 603:. 367:, 278:. 211:. 198:, 136:bp 47:A 4558:" 4552:" 4151:' 4147:' 4086:" 4082:" 4055:e 4048:t 4041:v 3997:? 3991:? 3900:† 3887:? 3602:/ 3447:) 3431:) 3225:e 3218:t 3211:v 3174:. 3150:: 3100:. 3086:: 3049:: 3043:8 2992:6 2974:. 2952:: 2922:. 2899:. 2855:. 2837:. 2825:: 2819:8 2798:) 2784:. 2762:: 2735:. 2723:: 2693:. 2671:: 2644:. 2622:: 2616:3 2595:. 2571:: 2563:: 2515:: 2485:. 2473:: 2450:. 2423:. 2396:. 2341:. 2321:: 2291:. 2266:. 2237:. 2208:. 2196:: 2169:. 2157:: 2130:. 2108:: 2100:: 2070:. 2048:: 2003:. 1979:: 1973:9 1952:. 1940:: 1917:. 1895:: 1870:. 1852:. 1823:. 1796:. 1776:: 1743:. 1723:: 1696:. 1667:. 1643:: 1637:8 1616:. 1582:. 1563:. 1527:. 1515:: 1482:. 1468:: 1449:. 1427:: 1400:. 1373:. 1359:. 1341:. 1327:. 1302:. 1178:: 479:( 382:. 353:. 182:. 34:. 20:)

Index

Plasmids
plasmoid

extrachromosomal DNA
chromosomal DNA
bacteria
archaea
eukaryotic organisms
antibiotic resistance
Artificial plasmids
vectors
molecular cloning
recombinant DNA
transformation
replicons
viruses
life
conjugation
horizontal gene transfer
mobilome
capsid
conjugative "sex" pilus
bp
cell
molecular biologist
Joshua Lederberg

episomes
chromosome
origin of replication

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