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Identifiability analysis

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way. The model overloading with number of independent parameters after its application to simulate finite experimental dataset may provide the good fit to experimental data by the price of making fitting results not sensible to the changes of parameters values, therefore leaving parameter values undetermined. Structural methods are also referred to as
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Structural identifiability analysis is a particular type of analysis in which the model structure itself is investigated for non-identifiability. Recognized non-identifiabilities may be removed analytically through substitution of the non-identifiable parameters with their combinations or by another
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Practical identifiability analysis can be performed by exploring the fit of existing model to experimental data. Once the fitting in any measure was obtained, parameter identifiability analysis can be performed either locally near a given point (usually near the parameter values provided the best
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could be applied as an important step to ensure correct choice of model, and sufficient amount of experimental data. The purpose of this analysis is either a quantified proof of correct model choice and integrality of experimental data acquired or such analysis can serve as an instrument for the
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or if there is an insufficient number of data points, it could be that the estimated parameter values could vary drastically without significantly influencing the goodness of fit. To address these issues the
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does not reveal how reliable the parameter estimates are. The goodness of fit is also not sufficient to prove the model was chosen correctly. For example, if the experimental data is
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detection of non-identifiable and sloppy parameters, helping planning the experiments and in building and improvement of the model at the early stages.
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model fit) or globally over the extended parameter space. The common example of the practical identifiability analysis is profile likelihood method.
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Stanhope, S.; Rubin, J. E.; Swigon D. (2014), "Identifiability of linear and linear-in-parameters dynamical systems from a single trajectory",
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Cobelli, C.; DiStefano, J. (1980). "Parameter and structural identifiability concepts and ambiguities: a critical review and analysis".
398:"Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood" 287:
Gutenkunst, Ryan N.; Waterfall, Joshua J.; Casey, Fergal P.; Brown, Kevin S.; Myers, Christopher R.; Sethna, James P. (2007).
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that are used to determine how well the parameters of a model are estimated by the quantity and quality of
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Raue, A.; Kreutz, C.; Maiwald, T.; Bachmann, J.; Schilling, M.; Klingmuller, U.; Timmer, J. (2009-08-01).
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Vandeginste, B.; Bates, D. M.; Watts, D. G. (1988). "Nonlinear regression analysis: Its applications".
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of a model, but also the relation of the model to particular experimental data or, more generally, the
361:"Registration of the expression patterns of Drosophila segmentation genes by two independent methods" 402: 365: 226: 33: 450: 221: 85: 343:
Lavielle, M.; Aarons, L. (2015), "What do we mean by identifiability in mixed effects models?",
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Methods used to determine how well the parameters of a model are estimated by experimental data
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Myasnikova, E.; Samsonova, A.; Kozlov, K.; Samsonova, M.; Reinitz, J. (2001-01-01).
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for the model and the number of independent experimental conditions to be varied.
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Brun, Roland; Reichert, Peter; Künsch, Hans R. (2001).
202: 447: 219: 108:Assuming a model is fit to experimental data, the 126:Structural and practical identifiability analysis 483: 345:Journal of Pharmacokinetics and Pharmacodynamics 260:Am. J. Physiol. Regul. Integr. Comp. Physiol. 92:. Therefore, these methods explore not only 434:SIAM Journal on Applied Dynamical Systems 415: 378: 326: 316: 306: 247: 69:Learn how and when to remove this message 32:This article includes a list of general 484: 18: 13: 38:it lacks sufficient corresponding 14: 513: 177:Parameter identification problem 23: 458:(3) (published 1989): 544–545. 143:degrees of freedom (statistics) 103: 84:is a group of methods found in 1: 417:10.1093/bioinformatics/btp358 380:10.1093/bioinformatics/17.1.3 272:10.1152/ajpregu.1980.239.1.R7 212: 318:10.1371/journal.pcbi.0030189 203:Cobelli & DiStefano 1980 7: 152: 10: 518: 294:PLOS Computational Biology 132:Structural identifiability 129: 353:10.1007/s10928-015-9459-4 227:Water Resources Research 189: 119:identifiability analysis 82:Identifiability analysis 451:Journal of Chemometrics 86:mathematical statistics 53:more precise citations. 464:10.1002/cem.1180030313 249:10.1029/2000WR900350 502:Regression analysis 240:2001WRR....37.1015B 183:Regression analysis 492:Numerical analysis 442:10.1137/130937913 436:, 13: 1792–1815; 410:(15): 1923–1929. 165:Estimation theory 90:experimental data 79: 78: 71: 509: 477: 429: 419: 392: 382: 340: 330: 320: 310: 283: 253: 251: 234:(4): 1015–1030. 206: 200: 74: 67: 63: 60: 54: 49:this article by 40:inline citations 27: 26: 19: 517: 516: 512: 511: 510: 508: 507: 506: 482: 481: 480: 474: 347:, 43: 111–122; 215: 210: 209: 201: 197: 192: 171:Identifiability 155: 134: 128: 110:goodness of fit 106: 98:data collection 94:identifiability 75: 64: 58: 55: 45:Please help to 44: 28: 24: 17: 12: 11: 5: 515: 505: 504: 499: 494: 479: 478: 472: 445: 430: 403:Bioinformatics 393: 366:Bioinformatics 356: 341: 284: 254: 216: 214: 211: 208: 207: 194: 193: 191: 188: 187: 186: 180: 174: 168: 162: 154: 151: 130:Main article: 127: 124: 105: 102: 77: 76: 31: 29: 22: 15: 9: 6: 4: 3: 2: 514: 503: 500: 498: 497:Interpolation 495: 493: 490: 489: 487: 475: 469: 465: 461: 457: 453: 452: 446: 443: 439: 435: 431: 427: 423: 418: 413: 409: 405: 404: 399: 394: 390: 386: 381: 376: 372: 368: 367: 362: 357: 354: 350: 346: 342: 338: 334: 329: 324: 319: 314: 309: 308:q-bio/0701039 304: 300: 296: 295: 290: 285: 281: 277: 273: 269: 266:(239): 7–24. 265: 262: 261: 255: 250: 245: 241: 237: 233: 229: 228: 223: 218: 217: 204: 199: 195: 184: 181: 178: 175: 172: 169: 166: 163: 160: 159:Curve fitting 157: 156: 150: 146: 144: 140: 133: 123: 120: 115: 111: 101: 99: 95: 91: 87: 83: 73: 70: 62: 52: 48: 42: 41: 35: 30: 21: 20: 455: 449: 433: 407: 401: 370: 364: 344: 301:(10): –189. 298: 292: 263: 258: 231: 225: 198: 147: 138: 135: 118: 107: 104:Introduction 81: 80: 65: 56: 37: 473:0471-816434 373:(1): 3–12. 59:August 2015 51:introducing 486:Categories 213:References 34:references 100:process. 426:19505944 389:11222257 337:17922568 153:See also 139:a priori 328:2000971 280:7396041 236:Bibcode 47:improve 470:  424:  387:  335:  325:  278:  36:, but 303:arXiv 190:Notes 114:noisy 468:ISBN 422:PMID 385:PMID 333:PMID 276:PMID 460:doi 438:doi 412:doi 375:doi 349:doi 323:PMC 313:doi 268:doi 264:239 244:doi 488:: 466:. 454:. 420:. 408:25 406:. 400:. 383:. 371:17 369:. 363:. 331:. 321:. 311:. 297:. 291:. 274:. 242:. 232:37 230:. 224:. 476:. 462:: 456:3 444:. 440:: 428:. 414:: 391:. 377:: 355:. 351:: 339:. 315:: 305:: 299:3 282:. 270:: 252:. 246:: 238:: 205:. 72:) 66:( 61:) 57:( 43:.

Index

references
inline citations
improve
introducing
Learn how and when to remove this message
mathematical statistics
experimental data
identifiability
data collection
goodness of fit
noisy
Structural identifiability
degrees of freedom (statistics)
Curve fitting
Estimation theory
Identifiability
Parameter identification problem
Regression analysis
Cobelli & DiStefano 1980
"Practical identifiability analysis of large environmental simulation models"
Water Resources Research
Bibcode
2001WRR....37.1015B
doi
10.1029/2000WR900350
Am. J. Physiol. Regul. Integr. Comp. Physiol.
doi
10.1152/ajpregu.1980.239.1.R7
PMID
7396041

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