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user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open
1143:
153:, the European Molecular Biology Network. EMBnet has many nodes worldwide most of which are national bioinformatics services. EMBnet has the programming expertise. In September 1998, the first workshop was held, when 30 people from EMBnet went to
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part of the name hints at the wider scope. The core EMBOSS groups are collaborating with many other groups to develop the new applications that the users need. This was done from the beginning with
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source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole.
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164:, rapid database searching with sequence patterns, protein motif identification (including domain analysis), and much more.
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International
Conference on Computational Intelligence Methods for Bioinformatics and Biostatistics
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Rice P, Longden I, Bleasby A (2000). "EMBOSS: The
European Molecular Biology Open Software Suite".
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Microsoft
Research - University of Trento Centre for Computational and Systems Biology
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is a free c software analysis package developed for the needs of the
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578:- Integration of some of EMBOSS tools in a graphical application
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African
Society for Bioinformatics and Computational Biology
633:"EMBOSS: The European Molecular Biology Open Software Suite"
992:
Max Planck
Institute of Molecular Cell Biology and Genetics
794:
407:
Transcription factors, promoters and terminator prediction
160:
The EMBOSS package contains a variety of applications for
1071:
International
Nucleotide Sequence Database Collaboration
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Translation of nucleotide sequence to protein sequence
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The AJAX and NUCLEUS libraries are released under the
157:
to learn about EMBOSS and to discuss the way forward.
763:, database of protein sequences grouping together
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391:Restriction enzyme sites in nucleotide sequences
1318:
998:US National Center for Biotechnology Information
343:Predictions of genes and other genomic features
279:Manipulation and display of sequence annotation
1083:International Society for Computational Biology
1150:ISCB Africa ASBCB Conference on Bioinformatics
375:Nucleic acid profile generation and searching
1097:Institute of Genomics and Integrative Biology
712:
171:. EMBOSS applications are released under the
1126:European Conference on Computational Biology
178:
1161:Research in Computational Molecular Biology
630:
1138:International Conference on Bioinformatics
719:
705:
431:Phylogenetic continuous character methods
32:
1132:Intelligent Systems for Molecular Biology
519:Protein profile generation and searching
1337:Science and technology in Cambridgeshire
463:Phylogenetic molecular sequence methods
439:Phylogenetic discrete character methods
1120:Basel Computational Biology Conference
624:
589:
295:Information and general help for users
1319:
572:web service interface including EMBOSS
213:Finding differences between sequences
205:Merging sequences to make a consensus
1077:International Society for Biocuration
975:European Molecular Biology Laboratory
700:
447:Phylogenetic distance matrix methods
16:Open source software analysis package
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455:Phylogenetic gene frequency methods
327:Composition of nucleotide sequences
1103:Japanese Society for Bioinformatics
527:Testing tools, not for general use
13:
1065:European Molecular Biology network
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471:Phylogenetic tree drawing methods
335:CpG island detection and analysis
169:GNU Library General Public Licence
14:
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1155:Pacific Symposium on Biocomputing
1059:Australia Bioinformatics Resource
1026:Swiss Institute of Bioinformatics
1009:Netherlands Bioinformatics Centre
969:European Bioinformatics Institute
681:
495:Composition of protein sequences
399:RNA folding methods and analysis
311:Nucleic acid secondary structure
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1287:
1286:
957:Database Center for Life Science
945:Computational Biology Department
833:Arabidopsis Information Resource
803:Specialised genomic databases:
428:Phylogeny continuous characters
423:Phylogenetic consensus methods
359:Nucleic acid sequence mutation
1004:Japanese Institute of Genetics
663:
564:Open Bioinformatics Foundation
383:Nucleic acid repeat detection
221:Dot plot sequence comparisons
1:
1342:South Cambridgeshire District
924:Rosalind (education platform)
841:Zebrafish Information Network
809:Saccharomyces Genome Database
649:10.1016/s0168-9525(00)02024-2
610:10.1016/S0168-9525(00)02024-2
582:
436:Phylogeny discrete characters
287:Hidden markov model analysis
271:Enzyme kinetics calculations
1347:Free bioinformatics software
1254:List of biological databases
773:Protein Information Resource
479:Protein secondary structure
460:Phylogeny molecular sequence
351:Nucleic acid motif searches
255:Publication-quality display
7:
747:European Nucleotide Archive
557:
487:Protein tertiary structure
246:Multiple sequence alignment
10:
1363:
671:"1.1. Licence Information"
631:Rice P, Bleasby A (1999).
511:Protein sequence mutation
452:Phylogeny gene frequencies
229:Global sequence alignment
173:GNU General Public Licence
80:GNU General Public Licence
21:Embossing (disambiguation)
18:
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1032:Wellcome Sanger Institute
986:J. Craig Venter Institute
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444:Phylogeny distance matrix
237:Local sequence alignment
179:EMBOSS application groups
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73:
60:
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1015:Philippine Genome Center
1327:Bioinformatics software
1259:Molecular phylogenetics
755:China National GeneBank
540:Utils database indexing
532:Utils database creation
503:Protein motif searches
963:DNA Data Bank of Japan
751:DNA Data Bank of Japan
535:Database installation
468:Phylogeny tree drawing
1332:Free science software
1244:Computational biology
759:Secondary databases:
637:Biochemist E-volution
404:Nucleic transcription
319:Codon usage analysis
210:Alignment differences
741:Sequence databases:
484:Protein 3d structure
476:Protein 2d structure
340:Nucleic gene finding
308:Nucleic 2d structure
19:For other uses, see
1037:Whitehead Institute
825:Rat Genome Database
492:Protein composition
420:Phylogeny consensus
412:Nucleic translation
396:Nucleic RNA folding
388:Nucleic restriction
332:Nucleic CpG islands
324:Nucleic composition
316:Nucleic codon usage
218:Alignment dot plots
202:Alignment consensus
197:Acd file utilities
28:
1274:Sequence alignment
981:Flatiron Institute
598:Trends in Genetics
543:Database indexing
367:Primer prediction
303:Menu interface(s)
242:Alignment multiple
162:sequence alignment
121:is an acronym for
26:
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1269:Sequence database
783:Protein Data Bank
777:Other databases:
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263:Sequence editing
108:molecular biology
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1249:List of biobanks
1213:Stockholm format
1021:Scripps Research
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693:
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690:Official website
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516:Protein profiles
508:Protein mutation
372:Nucleic profiles
356:Nucleic mutation
226:Alignment global
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380:Nucleic repeats
364:Nucleic primers
268:Enzyme kinetics
234:Alignment local
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1237:Related topics
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682:External links
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604:(6): 276–277.
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1198:Nexus format
1193:NeXML format
1188:FASTQ format
1183:FASTA format
1171:File formats
933:Institutions
871:
665:
643:(6): 276–7.
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568:Soaplab - A
189:Description
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51:Available in
1178:CRAM format
1099:(CSIR-IGIB)
292:Information
1321:Categories
1264:Sequencing
1228:GTF format
1223:GFF format
1218:VCF format
1208:SAM format
971:(EMBL-EBI)
897:SOAP suite
817:VectorBase
779:BioNumbers
765:Swiss-Prot
583:References
548:Utils misc
145:uite. The
41:Written in
1091:(ISCB-SC)
1061:(EMBL-AR)
994:(MPI-CBG)
735:Databases
129:olecular
93:.open-bio
1293:Category
1163:(RECOMB)
1113:Meetings
1067:(EMBnet)
917:Server:
892:SAMtools
887:PANGOLIN
850:Software
829:PHI-base
821:WormBase
791:InterPro
657:10827456
618:10827456
576:Genostar
558:See also
147:European
141:oftware
125:uropean
1305:Commons
1140:(InCoB)
1085:(ISCB)
1073:(INSDC)
1055:(ASBCB)
959:(DBCLS)
953:(COSBI)
867:Clustal
813:FlyBase
787:Ensembl
761:UniProt
743:GenBank
252:Display
155:Hinxton
133:iology
86:Website
75:License
55:English
1146:(CIBB)
1134:(ISMB)
1128:(ECCB)
1105:(JSBi)
1011:(NBIC)
1000:(NCBI)
988:(JCVI)
977:(EMBL)
965:(DDBJ)
919:ExPASy
902:TopHat
882:MUSCLE
872:EMBOSS
862:Bowtie
837:GISAID
797:, and
769:TrEMBL
655:
616:
186:Group
151:EMBnet
119:EMBOSS
104:EMBOSS
91:emboss
27:EMBOSS
1157:(PSB)
1079:(ISB)
1028:(SIB)
1017:(PGC)
947:(CBD)
911:Other
877:HMMER
857:BLAST
300:Menus
839:and
805:BOLD
795:KEGG
771:and
753:and
653:PMID
614:PMID
570:SOAP
524:Test
260:Edit
137:pen
110:and
95:.org
69:tool
62:Type
645:doi
606:doi
284:HMM
194:Acd
1323::
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175:.
720:e
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673:.
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647::
620:.
608::
143:S
139:S
135:O
131:B
127:M
123:E
45:C
23:.
Text is available under the Creative Commons Attribution-ShareAlike License. Additional terms may apply.
