Knowledge

Cole Trapnell

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Assistant Professor in the Department of Genome Sciences at the University of Washington
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Transcript assembly and abundance estimation with high-throughput RNA sequencing
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Langmead, Ben; Cole Trapnell; Mihai Pop; Steven L Salzberg (2009).
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Trapnell, Cole; Pachter, Lior; Salzberg, Steven L. (2009).
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Fogg, Christiana N.; Kovats, Diane E.; Shamir, Ron (2018).
212:(born 1982) is an assistant professor in the Department of 406: 409:"TopHat: discovering splice junctions with RNA-Seq" 336: 334: 273:"2018 ISCB Overton Prize awarded to Cole Trapnell" 632: 331: 270: 493:International Society for Computational Biology 226:International Society for Computational Biology 476: 666:University of Maryland, College Park alumni 483: 469: 254: 36: 19:For the American television producer, see 440: 383: 373: 314: 296: 266: 264: 44:Intelligent Systems for Molecular Biology 341:Trapnell, Bruce C. (Bruce Colston), 1982 633: 261: 464: 400: 349: 243: 241: 68:University of Maryland, College Park 13: 14: 677: 238: 661:University of Washington faculty 1: 425:10.1093/bioinformatics/btp120 231: 298:10.1371/journal.pcbi.1006163 7: 59:1982 (age 41–42) 10: 682: 646:American bioinformaticians 277:PLOS Computational Biology 210:Bruce Colston Trapnell Jr. 56:Bruce Colston Trapnell Jr. 18: 503: 183: 179: 163: 145: 131: 113: 106: 95: 74: 63: 51: 46:(ISMB) conference in 2018 35: 28: 375:10.1186/gb-2009-10-3-r25 250:publications indexed by 218:University of Washington 136:University of Washington 651:Overton Prize winners 220:. He was awarded the 42:Cole Trapnell at the 122:Cell differentiation 620:Christophe Dessimoz 345:Library of Congress 289:2018PLSCB..14E6163F 596:Curtis Huttenhower 542:Mathieu Blanchette 140:Harvard University 628: 627: 566:Steven E. Brenner 512:Christopher Burge 207: 206: 108:Scientific career 673: 584:Gonçalo Abecasis 572:Olga Troyanskaya 485: 478: 471: 462: 461: 455: 454: 444: 419:(9): 1105–1111. 404: 398: 397: 387: 377: 353: 347: 338: 329: 328: 318: 300: 268: 259: 258: 245: 203: 200: 198: 196: 194: 192: 190: 165:Doctoral advisor 159: 40: 26: 25: 681: 680: 676: 675: 674: 672: 671: 670: 631: 630: 629: 624: 499: 491:Winners of the 489: 459: 458: 405: 401: 354: 350: 339: 332: 283:(6): e1006163. 269: 262: 246: 239: 234: 214:Genome Sciences 187: 172: 170:Steven Salzberg 157: 138: 124: 120: 118:Transcriptomics 91: 64:Alma mater 58: 57: 47: 31: 24: 17: 12: 11: 5: 679: 669: 668: 663: 658: 653: 648: 643: 626: 625: 623: 622: 616: 610: 608:Christoph Bock 604: 598: 592: 586: 580: 578:Ziv Bar-Joseph 574: 568: 562: 556: 550: 544: 538: 532: 526: 520: 514: 507: 505: 501: 500: 488: 487: 480: 473: 465: 457: 456: 413:Bioinformatics 399: 362:Genome Biology 348: 330: 260: 252:Google Scholar 236: 235: 233: 230: 205: 204: 185: 181: 180: 177: 176: 167: 161: 160: 149: 143: 142: 133: 129: 128: 126:Non-coding RNA 115: 111: 110: 104: 103: 97: 93: 92: 90: 89: 84: 78: 76: 75:Known for 72: 71: 65: 61: 60: 55: 53: 49: 48: 41: 33: 32: 29: 21:Coles Trapnell 15: 9: 6: 4: 3: 2: 678: 667: 664: 662: 659: 657: 654: 652: 649: 647: 644: 642: 641:Living people 639: 638: 636: 621: 617: 615: 614:Cole Trapnell 611: 609: 605: 603: 599: 597: 593: 591: 587: 585: 581: 579: 575: 573: 569: 567: 563: 561: 557: 555: 551: 549: 545: 543: 539: 537: 533: 531: 527: 525: 521: 519: 515: 513: 509: 508: 506: 502: 498: 497:Overton Prize 494: 486: 481: 479: 474: 472: 467: 466: 463: 452: 448: 443: 438: 434: 430: 426: 422: 418: 414: 410: 403: 395: 391: 386: 381: 376: 371: 368:(3): 10:R25. 367: 363: 359: 352: 346: 342: 337: 335: 326: 322: 317: 312: 308: 304: 299: 294: 290: 286: 282: 278: 274: 267: 265: 257: 253: 249: 248:Cole Trapnell 244: 242: 237: 229: 227: 223: 222:Overton Prize 219: 215: 211: 202: 186: 182: 178: 175: 171: 168: 166: 162: 155: 154: 150: 148: 144: 141: 137: 134: 130: 127: 123: 119: 116: 112: 109: 105: 101: 100:Overton Prize 98: 94: 88: 85: 83: 80: 79: 77: 73: 69: 66: 62: 54: 50: 45: 39: 34: 30:Cole Trapnell 27: 22: 613: 602:Debora Marks 416: 412: 402: 365: 361: 351: 280: 276: 209: 208: 174:Lior Pachter 151: 132:Institutions 107: 656:1982 births 560:Trey Ideker 536:Ewan Birney 518:David Baker 193:.washington 635:Categories 590:Dana Pe'er 554:Aviv Regev 548:Eran Segal 232:References 504:Laureates 433:1460-2059 307:1553-7358 199:/trapnell 70:(BS, PhD) 530:Uri Alon 524:Jim Kent 451:19289445 394:19261174 325:29879112 197:/faculty 495:(ISCB) 442:2672628 385:2690996 316:5991640 285:Bibcode 224:by the 216:at the 184:Website 510:2001 449:  439:  431:  392:  382:  323:  313:  305:  158:(2010) 156:  147:Thesis 114:Fields 102:(2018) 96:Awards 87:TopHat 82:Bowtie 618:2019 612:2018 606:2017 600:2016 594:2015 588:2014 582:2013 576:2012 570:2011 564:2010 558:2009 552:2008 546:2007 540:2006 534:2005 528:2004 522:2003 516:2002 447:PMID 429:ISSN 390:PMID 321:PMID 303:ISSN 201:.htm 195:.edu 52:Born 437:PMC 421:doi 380:PMC 370:doi 343:at 311:PMC 293:doi 191:.gs 189:www 637:: 445:. 435:. 427:. 417:25 415:. 411:. 388:. 378:. 366:10 364:. 360:. 333:^ 319:. 309:. 301:. 291:. 281:14 279:. 275:. 263:^ 240:^ 484:e 477:t 470:v 453:. 423:: 396:. 372:: 327:. 295:: 287:: 23:.

Index

Coles Trapnell
Cole Trapnell
Intelligent Systems for Molecular Biology
University of Maryland, College Park
Bowtie
TopHat
Overton Prize
Transcriptomics
Cell differentiation
Non-coding RNA
University of Washington
Harvard University
Thesis
Transcript assembly and abundance estimation with high-throughput RNA sequencing
Doctoral advisor
Steven Salzberg
Lior Pachter
www.gs.washington.edu/faculty/trapnell.htm
Genome Sciences
University of Washington
Overton Prize
International Society for Computational Biology


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"2018 ISCB Overton Prize awarded to Cole Trapnell"

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