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Argimón, Silvia; Masim, Melissa A. L.; Gayeta, June M.; Lagrada, Marietta L.; MacAranas, Polle K. V.; Cohen, Victoria; Limas, Marilyn T.; Espiritu, Holly O.; Palarca, Janziel C.; Chilam, Jeremiah; Jamoralin, Manuel C.; Villamin, Alfred S.; Borlasa, Janice B.; Olorosa, Agnettah M.; Hernandez, Lara F.
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On 22 September 2022 it was announced that the Centre for
Genomic Pathogen Surveillance, part of the Big Data Institute at the University of Oxford, was awarded funding worth £7m for their work as an NIHR Global Health Research Unit (GHRU) for the next five years. The Centre’s research and capacity
319:
Under the auspices of the centre, the
Epicollect5 (used for data entry from distributed observers, e.g. by 'citizen science' programs), Microreact, and Pathogenwatch applications have been generated and shared. Microreact has seen extensive use during the
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The Centre for
Genomic Pathogen Surveillance opened in 2015 as a joint project between Imperial College London and Wellcome Sanger Institute. In 2017 it was announced that the centre would house a new Global Health Research Unit funded by the
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T.; Boehme, Karis D.; Jeffrey, Benjamin; Abudahab, Khalil; Hufano, Charmian M.; Sia, Sonia B.; Stelling, John; Holden, Matthew T. G.; Aanensen, David M.; Carlos, Celia C. (1 June 2020).
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From 2018 to 2021 the
Wellcome Sanger Institute and University of Oxford co-hosted the CGPS. From September 2021 the CGPS has been based at the University of Oxford.
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532:"Major new NIHR Global Health Research Unit to focus on data science and genomic surveillance of antimicrobial resistance — Oxford Big Data Institute"
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414:"The Centre for Genomic Pathogen Surveillance to house the Global Health Research Unit to monitor antibiotic resistant bacteria around the globe"
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270:. This has seen the centre becoming involved with surveillance of antibiotic resistance in a number of countries, for example, the Philippines.
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657:"Microreact has been developed by the Centre for Genomic Pathogen Surveillance at Imperial College London and the Wellcome Genome Campus"
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building work focuses on delivering genomics and enabling data for the surveillance of antimicrobial resistance (AMR).
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303:. In 2019, it was agreed that there would be collaboration between the Centre for Genomic Pathogen Surveillance, the
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Professor David
Aanensen, Director of the Centre for Genomic Pathogen Surveillance and Group Leader
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Hospitals in Europe are contributing to the spread of extremely drug-resistant bacteria
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507:"£12.2m funding will help Cambridge-led COG-UK expand Covid-19 genomic surveillance"
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Commitment to collaborate on using genomics for pathogen surveillance across Europe
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Big Data
Institute, Old Road Campus, University of Oxford, Headington, OX3 7LF
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David
Aanensen Director of The Centre for Genomic Pathogen Surveillance
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Information technology organisations based in the United
Kingdom
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How the Covid-19 Genomics UK Consortium sequenced Sars-Cov-2
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Phylogenetic
Assignment of Named Global Outbreak Lineages
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The centre is principally funded, and directed, by the
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Latest News | Centre for
Genomic Pathogen Surveillance
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pandemic, the centre received funding as part of the
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305:European Centre for Disease Prevention and Control
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354:List of phylogenetic tree visualization software
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369:Virus Pathogen Database and Analysis Resource
16:UK computational genomics research institute
778:Genetics or genomics research institutions
60:"Centre for Genomic Pathogen Surveillance"
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640:Superbug infections tracked across Europe
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296:The centre's director is David Aanensen.
111:Learn how and when to remove this message
788:Health informatics in the United Kingdom
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247:Centre for Genomic Pathogen Surveillance
126:Centre for Genomic Pathogen Surveillance
364:Ineos Oxford Institute for AMR Research
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264:National Institute for Health Research
818:Research institutes in Cambridgeshire
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324:pandemic, and is a component of the
301:Department of Health and Social Care
168:Genomic Epidemiology Research Centre
49:adding citations to reliable sources
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340:, Nuffield Department of Medicine,
253:research institute in Oxfordshire.
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674:"Pangolin web application release"
505:Paul Brackley (20 November 2020).
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151:Location within Oxfordshire
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393:fundingawards.nihr.ac.uk
204:51.7528154°N 1.2170949°W
663:, accessed 8 March 2021
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813:Public health genomics
783:Genomics organizations
705:, accessed 26 May 2021
703:www.computerweekly.com
251:computational genomics
223:15 m (49 ft)
209:51.7528154; -1.2170949
446:Nature Communications
268:antibiotic resistance
644:www.sciencedaily.com
389:"Funding and Awards"
342:University of Oxford
45:improve this article
458:2020NatCo..11.2719A
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160:General information
628:www.zmescience.com
359:Microbial Genomics
338:Big Data Institute
266:(NIHR) to look at
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38:verification
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684:18 February
642:5 May 2016
452:(1): 2719.
276:During the
207: /
182:Coordinates
737:Categories
728:GitLab.com
726:hosted at
680:. May 2020
541:4 November
375:References
307:, and the
192:51°45′10″N
71:newspapers
492:219156667
292:Structure
228:Completed
220:Elevation
195:1°13′02″W
753:Big data
484:32483195
348:See also
332:Location
322:COVID-19
278:COVID-19
516:8 March
475:7264328
454:Bibcode
424:7 March
398:2 March
257:History
173:Address
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245:The
231:2015
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47:by
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Text is available under the Creative Commons Attribution-ShareAlike License. Additional terms may apply.
