19:
1632:
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Buchner A, Lai T, Steppi S, Jobb G, Förster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, König A, Liss T, Lüssmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis A, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode
168:
a tool to facilitate assessment and management of phylogenetic tree collections. Given an input collection of rooted trees, PhyloExplorer provides facilities for obtaining statistics describing the collection, correcting invalid taxon names, extracting taxonomically relevant parts of the collection
215:
web-based tool for exploration of very large trees including those with millions of nodes, with search and metadata coloring. When provided with a mutation-annotated tree, it illustrates mutations on the tree and displays final genotypes.
2383:
Cock, Peter J. A.; Antao, Tiago; Chang, Jeffrey T.; Chapman, Brad A.; Cox, Cymon J.; Dalke, Andrew; Friedberg, Iddo; Hamelryck, Thomas; Kauff, Frank; Wilczynski, Bartek; de Hoon, Michiel J. L. (2009-06-01).
298:
2609:
373:
A multivalent browser for sequence alignment, phylogeny, and structure. Performs an interactive
Evolutionary Trace and other phylogeny-inspired analysis.
2247:
74:
an online tool for phylogenetic tree view (newick format) that allows multiple sequence alignments to be shown together with the trees (fasta format)
1728:
317:
Universal platform for the management, storage and analysis of all types of biological data, including tree and network inference of sequence data
383:
463:
Open-source tool for circular visualization with section and ring distortion and several other features such as branch clustering and pruning
656:
open-source javascript library for rendering highly-extensible, customizable phylogenetic trees; used for
Elsevier's interactive trees
2939:
610:
ETE (Environment for Tree
Exploration) is a toolkit that assists in the automated manipulation, analysis and visualization of trees.
577:
A collection of Perl modules for manipulating and visualizing phylogenetic data. Bio::Phylo is one part of a comprehensive suite of
1832:
Lichtarge O, Bourne HR, Cohen FE (March 1996). "An evolutionary trace method defines binding surfaces common to protein families".
2904:
2603:
2557:"ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data"
360:
Simple Java tree viewer able to read newick and nexus tree files. Can be used to color branches and produce vector artwork.
1349:"PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees"
476:
Open-source tree editor with numerous editing and formatting operations including combining different phylogenetic analyses
138:
uses IFIG (Interactive
Fractal Inspired Graphs) to display phylogenetic trees which can be zoomed in on to increase detail
116:
annotate trees with various types of data and export to various graphical formats; scriptable through a batch interface
1967:
Fernández A, Gómez S (2008). "Solving Non-uniqueness in
Agglomerative Hierarchical Clustering Using Multidendrograms".
2727:"phylotree.js - a JavaScript library for application development and interactive data visualization in phylogenetics"
669:
interactive phylogenetic tree visualization with numerical annotation graphs, with SVG or PNG output, implemented in
2909:
2954:
2949:
2934:
2924:
776:
689:, and is suitable for building JavaScript applications where users can view and interact with phylogenetic trees
564:: Part of Biopython, this module provides classes, functions and I/O support for working with phylogenetic trees
2443:"Using Chaos-Game-Representation for Analysing the SARS-CoV-2 Lineages, Newly Emerging Strains and Recombinants"
750:
255:
scalable, interactive, phylogenetic trees for the web, produces dynamic SVG or PNG output, implemented in Java
2686:"PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization"
2627:"jsPhyloSVG: a javascript library for visualizing interactive and vector-based phylogenetic trees on the web"
414:
Phylogenetic inference and data visualization for allelic/SNP sequences profiles using
Minimum Spanning Trees
2254:
643:
is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees.
388:
Software for statistical analysis of molecular evolution. It includes different tree visualization features
2929:
183:
Web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees
2499:
1725:
148:
Fractal-like representation to provide an interactive explorer of the tree of life "Ă la google maps"
2385:
450:
Open-source software for tree manipulation and annotation allowing incorporation of meta information
229:
96:
Client-side
Javascript SVG viewer for annotated rooted trees. Also supports phylogenetic networks
595:
Pipeline based on CGR method for accurate classification and tracking of rapidly evolving viruses
530:"All" refers to Microsoft Windows, Apple OSX and Linux; L=Linux, M=Apple Mac, W=Microsoft Windows
2386:"Biopython: freely available Python tools for computational molecular biology and bioinformatics"
777:"AQUAPONY: visualization and interpretation of phylogeographic information on phylogenetic trees"
126:
Link, visualise and explore sequence and meta-data using phylogenetic trees, maps and timelines
2944:
1511:"T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks"
1068:
ArgimĂłn S, Abudahab K, Goater RJ, Fedosejev A, Bhai J, Glasner C, et al. (November 2016).
1026:"Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation"
1439:"A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood"
2832:
2638:
2568:
2014:"PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods"
1796:
1586:
1301:
1244:
2781:
8:
2458:
2836:
2642:
2572:
2467:
1590:
1305:
1248:
2850:
2753:
2726:
2661:
2626:
2586:
2532:
2480:
2418:
2224:
2197:
2132:
2105:
2040:
2013:
1994:
1976:
1944:
1919:
1772:
1745:
1609:
1574:
1535:
1510:
1476:
1373:
1348:
1324:
1289:
1265:
1234:
1222:
1198:
1171:
1147:
1120:
1096:
1069:
997:
970:
946:
921:
897:
872:
848:
821:
33:
2296:
2279:
2198:"TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses"
1895:
1885:
1868:
1700:
1683:
1659:
1634:
1070:"Microreact: visualizing and sharing data for genomic epidemiology and phylogeography"
873:"EvolView, an online tool for visualizing, annotating and managing phylogenetic trees"
625:
An R package for tree visualization and annotation with grammar of graphics supported
2845:
2820:
2801:
2758:
2707:
2666:
2537:
2519:
2484:
2472:
2423:
2405:
2342:
2301:
2229:
2178:
2137:
2086:
2045:
2012:
Francisco AP, Vaz C, Monteiro PT, Melo-Cristino J, Ramirez M, Carriço JA (May 2012).
1949:
1900:
1849:
1777:
1705:
1664:
1614:
1540:
1468:
1460:
1419:
1378:
1329:
1270:
1223:"Phylo.io: Interactive Viewing and Comparison of Large Phylogenetic Trees on the Web"
1203:
1152:
1101:
1050:
1002:
951:
902:
853:
798:
223:
2854:
2702:
2685:
2590:
2401:
2337:
2320:
2173:
2156:
1480:
1414:
1397:
1045:
937:
793:
2881:
2840:
2793:
2748:
2738:
2697:
2656:
2646:
2576:
2527:
2511:
2462:
2454:
2413:
2397:
2365:
2332:
2291:
2219:
2209:
2168:
2127:
2117:
2076:
2035:
2025:
1986:
1939:
1931:
1890:
1880:
1841:
1795:
Bouckaert R, Heled J (2014-12-08). "DensiTree 2: Seeing Trees
Through the Forest".
1767:
1757:
1695:
1654:
1646:
1604:
1594:
1530:
1522:
1450:
1409:
1368:
1360:
1319:
1309:
1288:
Ranwez V, Clairon N, Delsuc F, Pourali S, Auberval N, Diser S, Berry V (May 2009).
1260:
1252:
1193:
1183:
1142:
1132:
1091:
1081:
1040:
992:
982:
941:
933:
892:
884:
843:
833:
788:
1998:
158:
View and compare up to 2 trees side by side with interactive HTML5 visualisations
2777:
2651:
2613:
1732:
1599:
1188:
1137:
705:
is a julia package for plotting phylogenetic trees and networks, integrated with
2821:"phytools: An R package for phylogenetic comparative biology (and other things)"
922:"IcyTree: rapid browser-based visualization for phylogenetic trees and networks"
685:
phylotree.js is a library that extends the popular data visualization framework
1290:"PhyloExplorer: a web server to validate, explore and query phylogenetic trees"
2870:"Toytree: A minimalist tree visualization and manipulation library for Python"
2743:
2442:
2280:"TreeView: an application to display phylogenetic trees on personal computers"
1990:
1816:
1455:
1438:
355:
228:
Tree inference and visualization (hierarchical, radial and axial tree views),
2918:
2523:
2409:
1920:"MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms"
1744:
Huson DH, Richter DC, Rausch C, Dezulian T, Franz M, Rupp R (November 2007).
1464:
1347:
Ribeiro-Gonçalves B, Francisco AP, Vaz C, Ramirez M, Carriço JA (July 2016).
969:
Moore RM, Harrison AO, McAllister SM, Polson SW, Wommack KE (February 2020).
755:
736:
Toytree: A minimalist tree visualization and manipulation library for Python
702:
640:
587:
193:
view, edit, and publish phylogenetic trees online; interfaces with databases
2886:
2869:
2797:
2581:
2556:
2515:
2122:
2081:
2064:
2030:
1935:
1762:
1314:
1256:
838:
706:
401:
Interactive open-source application to calculate and plot phylogenetic trees
2805:
2762:
2711:
2670:
2541:
2476:
2427:
2369:
2346:
2233:
2214:
2182:
2141:
2090:
2049:
1953:
1904:
1845:
1781:
1709:
1668:
1618:
1544:
1472:
1423:
1382:
1333:
1274:
1207:
1156:
1105:
1054:
1006:
955:
906:
857:
802:
84:
an online tool for visualizing, annotating and managing phylogenetic trees
2305:
1853:
1086:
2500:"ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data"
2106:"TreeDyn: towards dynamic graphics and annotations for analyses of trees"
1650:
1559:
1526:
1364:
888:
721:
Phylogenetic Tools for
Comparative Biology (and Other Things) based in R
519:
Flexible, modular software to visualise and manipulate phylogenetic trees
434:
327:
312:
2684:
Kreft L, Botzki A, Coppens F, Vandepoele K, Van Bel M (September 2017).
2318:
1025:
971:"Iroki: automatic customization and visualization of phylogenetic trees"
632:
288:
An integrated software environment for tree visualisation and annotation
1869:"JEvTrace: refinement and variations of the evolutionary trace in JAVA"
987:
728:
424:
169:
using a dedicated query language, and identifying related trees in the
32:
is a compilation of software tools and web portals used in visualizing
806:
617:
1021:
430:
2361:
1346:
18:
1981:
1801:
1575:"TreeVector: scalable, interactive, phylogenetic trees for the web"
1239:
170:
2104:
Chevenet F, Brun C, Bañuls AL, Jacq B, Christen R (October 2006).
2011:
1746:"Dendroscope: An interactive viewer for large phylogenetic trees"
578:
133:
22:
2548:
106:
Automatic customization and visualization of phylogenetic trees
1684:"ATV: display and manipulation of annotated phylogenetic trees"
332:
An interactive viewer for large phylogenetic trees and networks
64:
2498:
Huerta-Cepas, Jaime; Serra, François; Bork, Peer (June 2016).
2065:"Application of phylogenetic networks in evolutionary studies"
1067:
561:
2319:
Okonechnikov K, Golosova O, Fursov M, the UGENE team (2012).
968:
686:
670:
499:
243:
242:
A client-side HTML5/SVG Phylogenetic Tree
Renderer, based on
2683:
1398:"PhyloWidget: web-based visualizations for the tree of life"
2724:
2359:
1743:
1631:
1287:
819:
2555:
Yu G, Smith DK, Zhu H, Guan Y, Lam TT (January 1, 2017).
1918:
Kumar S, Stecher G, Li M, Knyaz C, Tamura K (June 2018).
602:
514:
1572:
1560:"TidyTree: Uncompromisingly Flexible Phylogenetic Trees"
210:
1573:
Pethica R, Barker G, Kovacs T, Gough J (January 2010).
1495:
871:
Zhang H, Gao S, Lercher MJ, Hu S, Chen WH (July 2012).
91:
2103:
2775:
2497:
2382:
2248:"Publication Analysis 1996-2006 Evolutionary Biology"
2157:"Treevolution: visual analysis of phylogenetic trees"
1220:
820:
Huerta-Cepas J, Dopazo J, GabaldĂłn T (January 2010).
504:
An opensource visual interface for Phylip 3.6 package
345:
A viewer capable of viewing multiple overlaid trees.
2782:"PhyloNetworks: A Package for phylogenetic networks"
2725:
Shank SD, Weaver S, Kosakovsky Pond SL (July 2018).
2625:
Smits SA, Ouverney CC (August 2010). Poon AF (ed.).
2441:
Thind, Amarinder Singh; Sinha, Somdatta (May 2023).
1831:
58:
Annotations QUick Analysis for PhylOgeNY (Aquapony)
1917:
1508:
1437:Guindon, Stéphane; Gascuel, Olivier (2003-10-01).
1121:"OneZoom: a fractal explorer for the tree of life"
774:
870:
2916:
2321:"Unipro UGENE: a unified bioinformatics toolkit"
2154:
822:"ETE: a python Environment for Tree Exploration"
813:
1866:
1635:"ARB: a software environment for sequence data"
1221:Robinson O, Dylus D, Dessimoz C (August 2016).
1118:
775:Cazaux B, Castel G, Rivals E (September 2019).
2554:
1966:
1794:
1436:
2624:
303:Java tree viewer and editor (used to be ATV)
2195:
1625:
1509:Boc A, Diallo AB, Makarenkov V (July 2012).
1172:"Lifemap: exploring the entire Tree of Life"
2360:Bianchini, G; Sánchez-Baracaldo, P (2023).
2062:
1019:
2867:
2818:
2440:
1681:
1395:
2885:
2844:
2752:
2742:
2701:
2660:
2650:
2580:
2531:
2466:
2417:
2336:
2295:
2223:
2213:
2172:
2131:
2121:
2080:
2039:
2029:
1980:
1943:
1894:
1884:
1800:
1771:
1761:
1699:
1658:
1608:
1598:
1534:
1493:
1454:
1413:
1372:
1323:
1313:
1264:
1238:
1197:
1187:
1169:
1146:
1136:
1095:
1085:
1044:
996:
986:
945:
896:
847:
837:
792:
2284:Computer Applications in the Biosciences
232:detection and HGT network visualization
17:
919:
2917:
2905:A 'comprehensive list' of Tree Editors
2155:SantamarĂa R, TherĂłn R (August 2009).
2056:
1726:BioNumerics protocols used by Pulsenet
1557:
2196:Stöver BC, Müller KF (January 2010).
1721:
1719:
2459:10.2174/0113892029264990231013112156
2277:
2063:Huson DH, Bryant D (February 2006).
263:
203:a Phylogenetic tReE viSualisaTion.
13:
1716:
39:
30:phylogenetic tree viewing software
14:
2966:
2898:
1886:10.1186/gb-2002-3-12-research0077
1682:Zmasek CM, Eddy SR (April 2001).
61:Javascript tree viewer for Beast
2940:Lists of bioinformatics software
2846:10.1111/j.2041-210X.2011.00169.x
2561:Methods in Ecology and Evolution
1867:Joachimiak MP, Cohen FE (2002).
1396:Jordan GE, Piel WH (July 2008).
113:iTOL - interactive Tree Of Life
2861:
2812:
2786:Molecular Biology and Evolution
2769:
2718:
2677:
2618:
2597:
2504:Molecular Biology and Evolution
2491:
2434:
2376:
2353:
2312:
2297:10.1093/bioinformatics/12.4.357
2271:
2240:
2189:
2148:
2097:
2069:Molecular Biology and Evolution
2005:
1960:
1924:Molecular Biology and Evolution
1911:
1860:
1825:
1809:
1788:
1737:
1701:10.1093/bioinformatics/17.4.383
1675:
1566:
1551:
1502:
1487:
1430:
1389:
1340:
1281:
1227:Molecular Biology and Evolution
1214:
1119:Rosindell J, Harmon LJ (2012).
2604:interactive-phylogenetic-trees
1163:
1112:
1061:
1013:
962:
913:
864:
768:
751:List of phylogenetics software
1:
2703:10.1093/bioinformatics/btx324
2402:10.1093/bioinformatics/btp163
2338:10.1093/bioinformatics/bts091
2174:10.1093/bioinformatics/btp333
1415:10.1093/bioinformatics/btn235
1046:10.1093/bioinformatics/btl529
938:10.1093/bioinformatics/btx155
883:(Web Server issue): W569–72.
794:10.1093/bioinformatics/btz011
761:
2652:10.1371/journal.pone.0012267
1834:Journal of Molecular Biology
1600:10.1371/journal.pone.0008934
1521:(Web Server issue): W573–9.
1189:10.1371/journal.pbio.2001624
1138:10.1371/journal.pbio.1001406
533:
429:Software for viewing trees,
7:
744:
10:
2971:
2776:SolĂs-Lemus C, Bastide P,
2362:"TreeViewer Version 2.1.0"
920:Vaughan TG (August 2017).
2744:10.1186/s12859-018-2283-2
1991:10.1007/s00357-008-9004-x
1969:Journal of Classification
1731:December 6, 2011, at the
1456:10.1080/10635150390235520
1633:A, Schleifer KH (2004).
1294:BMC Evolutionary Biology
230:Horizontal gene transfer
71:ETE toolkit Tree Viewer
2887:10.1111/2041-210X.13313
2582:10.1111/2041-210X.12628
2278:Page RD (August 1996).
2123:10.1186/1471-2105-7-439
2031:10.1186/1471-2105-13-87
1763:10.1186/1471-2105-8-460
1315:10.1186/1471-2148-9-108
839:10.1186/1471-2105-11-24
2955:Tree of life (biology)
2950:Visualization software
2935:Genetics-related lists
2925:Phylogenetics software
2370:10.5281/zenodo.7768343
2215:10.1186/1471-2105-11-7
1846:10.1006/jmbi.1996.0167
1822:accessed 17 April 2018
1639:Nucleic Acids Research
1515:Nucleic Acids Research
1353:Nucleic Acids Research
877:Nucleic Acids Research
25:
2798:10.1093/molbev/msx235
2516:10.1093/molbev/msw046
2082:10.1093/molbev/msj030
1936:10.1093/molbev/msy096
1257:10.1093/molbev/msw080
1170:de Vienne DM (2016).
1087:10.1099/mgen.0.000093
21:
2910:List of Tree Editors
1879:(12): RESEARCH0077.
489:Treeviewing software
2868:Eaton, DAR (2019).
2837:2012MEcEv...3..217R
2819:Revell, LJ (2012).
2643:2010PLoSO...512267S
2573:2017MEcEv...8...28Y
1591:2010PLoSO...5.8934P
1306:2009BMCEE...9..108R
1249:2016arXiv160204258R
437:, and other graphs
2930:Genetics databases
2874:Methods Ecol. Evol
2825:Methods Ecol. Evol
2731:BMC Bioinformatics
2612:2017-05-31 at the
2202:BMC Bioinformatics
2110:BMC Bioinformatics
2018:BMC Bioinformatics
1750:BMC Bioinformatics
1651:10.1093/nar/gkh293
1527:10.1093/nar/gks485
1494:Sanderson (2021).
1443:Systematic Biology
1365:10.1093/nar/gkw359
1074:Microbial Genomics
988:10.7717/peerj.8584
889:10.1093/nar/gks576
826:BMC Bioinformatics
579:Perl biology tools
34:phylogenetic trees
26:
2792:(12): 3292–3298.
2696:(18): 2946–2947.
2396:(11): 1422–1423.
1815:Rambaut A. 2018.
1558:Boyles A (2019).
932:(15): 2392–2394.
787:(17): 3163–3165.
742:
741:
528:
527:
398:MultiDendrograms
261:
260:
224:T-REX (Webserver)
2962:
2892:
2891:
2889:
2865:
2859:
2858:
2848:
2816:
2810:
2809:
2773:
2767:
2766:
2756:
2746:
2722:
2716:
2715:
2705:
2681:
2675:
2674:
2664:
2654:
2622:
2616:
2607:www.elsevier.com
2601:
2595:
2594:
2584:
2552:
2546:
2545:
2535:
2510:(6): 1635–1638.
2495:
2489:
2488:
2470:
2447:Current Genomics
2438:
2432:
2431:
2421:
2380:
2374:
2373:
2357:
2351:
2350:
2340:
2316:
2310:
2309:
2299:
2275:
2269:
2268:
2266:
2265:
2259:
2253:. Archived from
2252:
2244:
2238:
2237:
2227:
2217:
2193:
2187:
2186:
2176:
2152:
2146:
2145:
2135:
2125:
2101:
2095:
2094:
2084:
2060:
2054:
2053:
2043:
2033:
2009:
2003:
2002:
1984:
1964:
1958:
1957:
1947:
1930:(6): 1547–1549.
1915:
1909:
1908:
1898:
1888:
1864:
1858:
1857:
1829:
1823:
1813:
1807:
1806:
1804:
1792:
1786:
1785:
1775:
1765:
1741:
1735:
1723:
1714:
1713:
1703:
1679:
1673:
1672:
1662:
1629:
1623:
1622:
1612:
1602:
1570:
1564:
1563:
1555:
1549:
1548:
1538:
1506:
1500:
1499:
1491:
1485:
1484:
1458:
1434:
1428:
1427:
1417:
1393:
1387:
1386:
1376:
1344:
1338:
1337:
1327:
1317:
1285:
1279:
1278:
1268:
1242:
1218:
1212:
1211:
1201:
1191:
1182:(12): e2001624.
1167:
1161:
1160:
1150:
1140:
1131:(10): e1001406.
1116:
1110:
1109:
1099:
1089:
1065:
1059:
1058:
1048:
1030:
1024:(January 2007).
1017:
1011:
1010:
1000:
990:
981:(e8584): e8584.
966:
960:
959:
949:
917:
911:
910:
900:
868:
862:
861:
851:
841:
817:
811:
810:
805:. Archived from
796:
772:
707:PhyloNetworks.jl
538:
537:
268:
267:
264:Desktop software
180:PHYLOViZ Online
44:
43:
2970:
2969:
2965:
2964:
2963:
2961:
2960:
2959:
2915:
2914:
2901:
2896:
2895:
2866:
2862:
2817:
2813:
2774:
2770:
2723:
2719:
2682:
2678:
2623:
2619:
2614:Wayback Machine
2602:
2598:
2553:
2549:
2496:
2492:
2439:
2435:
2381:
2377:
2358:
2354:
2317:
2313:
2276:
2272:
2263:
2261:
2257:
2250:
2246:
2245:
2241:
2194:
2190:
2153:
2149:
2102:
2098:
2061:
2057:
2010:
2006:
1965:
1961:
1916:
1912:
1865:
1861:
1830:
1826:
1814:
1810:
1793:
1789:
1742:
1738:
1733:Wayback Machine
1724:
1717:
1680:
1676:
1630:
1626:
1571:
1567:
1556:
1552:
1507:
1503:
1492:
1488:
1435:
1431:
1394:
1390:
1359:(W1): W246–51.
1345:
1341:
1286:
1282:
1219:
1215:
1168:
1164:
1117:
1113:
1080:(11): e000093.
1066:
1062:
1028:
1018:
1014:
967:
963:
918:
914:
869:
865:
818:
814:
773:
769:
764:
747:
536:
266:
42:
40:Online software
12:
11:
5:
2968:
2958:
2957:
2952:
2947:
2942:
2937:
2932:
2927:
2913:
2912:
2907:
2900:
2899:External links
2897:
2894:
2893:
2880:(1): 187–191.
2860:
2831:(2): 217–223.
2811:
2768:
2717:
2690:Bioinformatics
2676:
2617:
2596:
2547:
2490:
2453:(3): 187–195.
2433:
2390:Bioinformatics
2375:
2352:
2325:Bioinformatics
2311:
2270:
2239:
2188:
2167:(15): 1970–1.
2161:Bioinformatics
2147:
2096:
2075:(2): 254–267.
2055:
2004:
1959:
1910:
1873:Genome Biology
1859:
1840:(2): 342–358.
1824:
1808:
1802:10.1101/012401
1787:
1736:
1715:
1688:Bioinformatics
1674:
1645:(4): 1363–71.
1624:
1565:
1550:
1501:
1486:
1449:(5): 696–704.
1429:
1408:(14): 1641–2.
1402:Bioinformatics
1388:
1339:
1280:
1213:
1162:
1111:
1060:
1033:Bioinformatics
1012:
961:
926:Bioinformatics
912:
863:
812:
809:on 2019-02-03.
781:Bioinformatics
766:
765:
763:
760:
759:
758:
753:
746:
743:
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739:
737:
734:
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696:PhyloPlots.jl
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177:
176:
174:
166:
165:PhyloExplorer
162:
161:
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142:
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139:
136:
130:
129:
127:
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54:
51:
48:
41:
38:
9:
6:
4:
3:
2:
2967:
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2951:
2948:
2946:
2945:Phylogenetics
2943:
2941:
2938:
2936:
2933:
2931:
2928:
2926:
2923:
2922:
2920:
2911:
2908:
2906:
2903:
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2888:
2883:
2879:
2875:
2871:
2864:
2856:
2852:
2847:
2842:
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2834:
2830:
2826:
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2815:
2807:
2803:
2799:
2795:
2791:
2787:
2783:
2779:
2772:
2764:
2760:
2755:
2750:
2745:
2740:
2736:
2732:
2728:
2721:
2713:
2709:
2704:
2699:
2695:
2691:
2687:
2680:
2672:
2668:
2663:
2658:
2653:
2648:
2644:
2640:
2637:(8): e12267.
2636:
2632:
2628:
2621:
2615:
2611:
2608:
2605:
2600:
2592:
2588:
2583:
2578:
2574:
2570:
2566:
2562:
2558:
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2543:
2539:
2534:
2529:
2525:
2521:
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2509:
2505:
2501:
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2482:
2478:
2474:
2469:
2464:
2460:
2456:
2452:
2448:
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2429:
2425:
2420:
2415:
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2407:
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2399:
2395:
2391:
2387:
2379:
2371:
2367:
2363:
2356:
2348:
2344:
2339:
2334:
2331:(8): 1166–7.
2330:
2326:
2322:
2315:
2307:
2303:
2298:
2293:
2289:
2285:
2281:
2274:
2260:on 2015-02-14
2256:
2249:
2243:
2235:
2231:
2226:
2221:
2216:
2211:
2207:
2203:
2199:
2192:
2184:
2180:
2175:
2170:
2166:
2162:
2158:
2151:
2143:
2139:
2134:
2129:
2124:
2119:
2115:
2111:
2107:
2100:
2092:
2088:
2083:
2078:
2074:
2070:
2066:
2059:
2051:
2047:
2042:
2037:
2032:
2027:
2023:
2019:
2015:
2008:
2000:
1996:
1992:
1988:
1983:
1978:
1974:
1970:
1963:
1955:
1951:
1946:
1941:
1937:
1933:
1929:
1925:
1921:
1914:
1906:
1902:
1897:
1892:
1887:
1882:
1878:
1874:
1870:
1863:
1855:
1851:
1847:
1843:
1839:
1835:
1828:
1821:
1818:
1817:FigTree 1.4.4
1812:
1803:
1798:
1791:
1783:
1779:
1774:
1769:
1764:
1759:
1755:
1751:
1747:
1740:
1734:
1730:
1727:
1722:
1720:
1711:
1707:
1702:
1697:
1693:
1689:
1685:
1678:
1670:
1666:
1661:
1656:
1652:
1648:
1644:
1640:
1636:
1628:
1620:
1616:
1611:
1606:
1601:
1596:
1592:
1588:
1584:
1580:
1576:
1569:
1561:
1554:
1546:
1542:
1537:
1532:
1528:
1524:
1520:
1516:
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1505:
1497:
1490:
1482:
1478:
1474:
1470:
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1452:
1448:
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1433:
1425:
1421:
1416:
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1399:
1392:
1384:
1380:
1375:
1370:
1366:
1362:
1358:
1354:
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1343:
1335:
1331:
1326:
1321:
1316:
1311:
1307:
1303:
1299:
1295:
1291:
1284:
1276:
1272:
1267:
1262:
1258:
1254:
1250:
1246:
1241:
1236:
1233:(8): 2163–6.
1232:
1228:
1224:
1217:
1209:
1205:
1200:
1195:
1190:
1185:
1181:
1177:
1173:
1166:
1158:
1154:
1149:
1144:
1139:
1134:
1130:
1126:
1122:
1115:
1107:
1103:
1098:
1093:
1088:
1083:
1079:
1075:
1071:
1064:
1056:
1052:
1047:
1042:
1038:
1034:
1027:
1023:
1016:
1008:
1004:
999:
994:
989:
984:
980:
976:
972:
965:
957:
953:
948:
943:
939:
935:
931:
927:
923:
916:
908:
904:
899:
894:
890:
886:
882:
878:
874:
867:
859:
855:
850:
845:
840:
835:
831:
827:
823:
816:
808:
804:
800:
795:
790:
786:
782:
778:
771:
767:
757:
756:Phylogenetics
754:
752:
749:
748:
738:
735:
732:
730:
727:
726:
723:
720:
717:
714:
713:
710:
708:
704:
703:PhyloPlots.jl
701:
698:
695:
694:
691:
688:
684:
681:
679:phylotree.js
678:
677:
674:
672:
668:
665:
662:
661:
658:
655:
652:
649:
648:
645:
642:
639:
636:
634:
631:
630:
627:
624:
621:
619:
616:
615:
612:
609:
606:
604:
601:
600:
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594:
591:
589:
586:
585:
582:
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576:
573:
570:
569:
566:
563:
560:
557:
554:
553:
549:
546:
543:
540:
539:
531:
524:
521:
518:
516:
513:
512:
509:
506:
503:
501:
498:
497:
494:
491:
488:
485:
484:
481:
478:
475:
472:
471:
468:
465:
462:
460:Treevolution
459:
458:
455:
452:
449:
446:
445:
442:
439:
436:
432:
428:
426:
423:
422:
419:
416:
413:
410:
409:
406:
403:
400:
397:
396:
393:
390:
387:
385:
382:
381:
378:
375:
372:
369:
368:
365:
362:
359:
357:
354:
353:
350:
347:
344:
341:
340:
337:
334:
331:
329:
326:
325:
322:
319:
316:
314:
311:
310:
307:
305:
302:
300:
299:Archaeopteryx
297:
296:
293:
290:
287:
284:
283:
279:
276:
273:
270:
269:
257:
254:
251:
250:
247:
245:
241:
238:
237:
234:
231:
227:
225:
222:
221:
218:
214:
212:
209:
208:
205:
202:
199:
198:
195:
192:
189:
188:
185:
182:
179:
178:
175:
172:
167:
164:
163:
160:
157:
154:
153:
150:
147:
144:
143:
140:
137:
135:
132:
131:
128:
125:
122:
121:
118:
115:
112:
111:
108:
105:
102:
101:
98:
95:
93:
90:
89:
86:
83:
80:
79:
76:
73:
70:
69:
66:
63:
60:
57:
56:
52:
49:
46:
45:
37:
35:
31:
28:This list of
24:
20:
16:
2877:
2873:
2863:
2828:
2824:
2814:
2789:
2785:
2771:
2734:
2730:
2720:
2693:
2689:
2679:
2634:
2630:
2620:
2606:
2599:
2567:(1): 28–36.
2564:
2560:
2550:
2507:
2503:
2493:
2450:
2446:
2436:
2393:
2389:
2378:
2355:
2328:
2324:
2314:
2290:(4): 357–8.
2287:
2283:
2273:
2262:. Retrieved
2255:the original
2242:
2205:
2201:
2191:
2164:
2160:
2150:
2113:
2109:
2099:
2072:
2068:
2058:
2021:
2017:
2007:
1975:(1): 43–65.
1972:
1968:
1962:
1927:
1923:
1913:
1876:
1872:
1862:
1837:
1833:
1827:
1819:
1811:
1790:
1753:
1749:
1739:
1694:(4): 383–4.
1691:
1687:
1677:
1642:
1638:
1627:
1585:(1): e8934.
1582:
1578:
1568:
1553:
1518:
1514:
1504:
1489:
1446:
1442:
1432:
1405:
1401:
1391:
1356:
1352:
1342:
1297:
1293:
1283:
1230:
1226:
1216:
1179:
1176:PLOS Biology
1175:
1165:
1128:
1125:PLOS Biology
1124:
1114:
1077:
1073:
1063:
1039:(1): 127–8.
1036:
1032:
1015:
978:
974:
964:
929:
925:
915:
880:
876:
866:
829:
825:
815:
807:the original
784:
780:
770:
529:
473:TreeGraph 2
435:NeighborNets
190:PhyloWidget
29:
27:
15:
1020:Letunic I,
682:Javascript
666:Javascript
653:Javascript
650:jsPhyloSVG
571:Bio::Phylo
547:Description
328:Dendroscope
313:BioNumerics
274:Description
252:TreeVector
123:Microreact
50:Description
2919:Categories
2737:(1): 276.
2264:2008-10-22
1982:cs/0608049
1820:github.com
1496:"Taxonium"
1300:(1): 108.
1240:1602.04258
762:References
555:Bio.Phylo
515:TreeViewer
431:cladograms
425:SplitsTree
342:DensiTree
173:database.
2524:0737-4038
2485:264500732
2410:1367-4811
1465:1063-5157
715:Phytools
550:Citation
534:Libraries
486:TreeView
411:PHYLOViZ
370:JEvTrace
280:Citation
239:TidyTree
155:Phylo.io
81:EvolView
2855:32670711
2806:28961984
2780:(2017).
2763:30045713
2712:28525531
2671:20805892
2631:PLOS ONE
2610:Archived
2591:63705866
2542:26921390
2477:38178984
2468:10761335
2428:19304878
2347:22368248
2234:20051126
2183:19470585
2142:17032440
2091:16221896
2050:22568821
1954:29722887
1905:12537566
1782:18034891
1729:Archived
1710:11301314
1669:14985472
1619:20126613
1579:PLOS ONE
1545:22675075
1481:13857323
1473:14530136
1424:18487241
1383:27131357
1334:19450253
1275:27189561
1208:28005907
1157:23091419
1106:28348833
1055:17050570
1007:32149022
956:28407035
907:22695796
858:20070885
803:30649190
745:See also
641:GraPhlAn
633:GraPhlAn
588:CGRphylo
544:Language
447:TreeDyn
211:Taxonium
171:TreeBASE
145:Lifemap
53:License
2833:Bibcode
2754:6060545
2662:2923619
2639:Bibcode
2569:Bibcode
2533:4868116
2419:2682512
2306:8902363
2225:2806359
2133:1615880
2116:: 439.
2041:3403920
1945:5967553
1854:8609628
1797:bioRxiv
1773:2216043
1756:: 460.
1610:2812488
1587:Bibcode
1536:3394261
1374:4987911
1325:2695458
1302:Bibcode
1266:4948708
1245:Bibcode
1199:5179005
1148:3472976
1097:5320705
998:7049256
947:5860111
898:3394307
849:2820433
733:Python
729:toytree
637:Python
607:Python
558:Python
356:FigTree
200:PRESTO
134:OneZoom
92:IcyTree
23:OneZoom
2853:
2804:
2761:
2751:
2710:
2669:
2659:
2589:
2540:
2530:
2522:
2483:
2475:
2465:
2426:
2416:
2408:
2345:
2304:
2232:
2222:
2181:
2140:
2130:
2089:
2048:
2038:
2024:: 87.
1999:434036
1997:
1952:
1942:
1903:
1896:151179
1893:
1852:
1799:
1780:
1770:
1708:
1667:
1660:390282
1657:
1617:
1607:
1562:. CDC.
1543:
1533:
1479:
1471:
1463:
1422:
1381:
1371:
1332:
1322:
1273:
1263:
1206:
1196:
1155:
1145:
1104:
1094:
1053:
1022:Bork P
1005:
995:
954:
944:
905:
895:
856:
846:
832:: 24.
801:
699:Julia
663:PhyD3
618:ggtree
103:Iroki
65:CeCILL
2851:S2CID
2778:Ané C
2587:S2CID
2481:S2CID
2258:(PDF)
2251:(PDF)
2208:: 7.
1995:S2CID
1977:arXiv
1477:S2CID
1296:. 9.
1235:arXiv
1029:(PDF)
975:PeerJ
687:D3.js
671:D3.js
574:Perl
562:Phylo
541:Name
500:UGENE
271:Name
244:D3.js
2802:PMID
2759:PMID
2708:PMID
2667:PMID
2538:PMID
2520:ISSN
2473:PMID
2424:PMID
2406:ISSN
2343:PMID
2302:PMID
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