Knowledge

SplitsTree

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Holland, Barbara; Moulton, Vincent (2003). Benson, Gary; Page, Roderic D. M. (eds.). "Consensus Networks: A Method for Visualising Incompatibilities in Collections of Trees".
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Bandelt, H. J.; Dress, A. W. (1992). "Split decomposition: a new and useful approach to phylogenetic analysis of distance data".
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provides a wide range of examples for splits graphs, most of which were generated with SplitsTree
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lists software, researchers and literature dealing with phylogenetic networks
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for the latest version (4.15) and manual (June 2019), hosted by the
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or a set of trees. SplitsTree implements published methods such as
413: 254:"Application of Phylogenetic Networks in Evolutionary Studies" 206: 225: 478: 408:The Genealogical World of Phylogenetic Networks 379:(New Website for informations about SplitsTree) 232:"Metric spaces in pure and applied mathematics" 335: 251: 107:/mathematisch-naturwissenschaftliche-fakultaet 461: 292: 132:is a popular freeware program for inferring 468: 454: 269: 404:, hosted at the University of Washington 174: 344:. Springer Berlin Heidelberg: 165–176. 144:, from various types of data such as a 479: 219: 340:. Lecture Notes in Computer Science. 295:Molecular Phylogenetics and Evolution 245: 420: 414:Who is Who in Phylogenetic Networks 13: 391:Eberhard Karls University Tübingen 14: 503: 370: 424: 252:Huson, D. H.; D. Bryant (2006). 387:Department of Computer Science 329: 286: 1: 212: 186:generated by SplitsTree v4.6. 115:/algorithms-in-bioinformatics 27:Daniel Huson and David Bryant 440:. You can help Knowledge by 396:Algorithms in Bioinformatics 350:10.1007/978-3-540-39763-2_13 338:Algorithms in Bioinformatics 307:10.1016/1055-7903(92)90021-8 7: 190: 10: 508: 419: 402:List of phylogeny software 383:Alternative download page 197:Phylogenetic tree viewers 95: 85: 73: 63: 59: 47: 35: 31: 21: 69:Windows, Linux, Mac OS X 492:Science software stubs 487:Phylogenetics software 187: 168:networks. It uses the 140:, or, more generally, 271:10.1093/molbev/msj030 239:Documenta Mathematica 230:; V. Moulton (2001). 178: 138:phylogenetic networks 184:phylogenetic network 434:scientific software 377:SplitsTree homepage 18: 188: 146:sequence alignment 134:phylogenetic trees 16: 449: 448: 170:NEXUS file format 127: 126: 499: 470: 463: 456: 428: 421: 364: 363: 333: 327: 326: 290: 284: 283: 273: 249: 243: 242: 236: 223: 179:An example of a 123: 120: 118: 116: 114: 112: 110: 108: 106: 104: 102: 65:Operating system 42:4.17.1 / 2021 19: 15: 507: 506: 502: 501: 500: 498: 497: 496: 477: 476: 475: 474: 373: 368: 367: 360: 334: 330: 291: 287: 258:Mol. Biol. Evol 250: 246: 234: 224: 220: 215: 193: 156:decomposition, 150:distance matrix 99: 55: 49:Preview release 43: 12: 11: 5: 505: 495: 494: 489: 473: 472: 465: 458: 450: 447: 446: 429: 418: 417: 411: 405: 399: 393: 380: 372: 371:External links 369: 366: 365: 358: 328: 301:(3): 242–252. 285: 264:(2): 254–267. 244: 217: 216: 214: 211: 210: 209: 204: 199: 192: 189: 125: 124: 97: 93: 92: 89: 83: 82: 80:Bioinformatics 77: 71: 70: 67: 61: 60: 57: 56: 53: 51: 45: 44: 41: 39: 37:Stable release 33: 32: 29: 28: 25: 9: 6: 4: 3: 2: 504: 493: 490: 488: 485: 484: 482: 471: 466: 464: 459: 457: 452: 451: 445: 443: 439: 436:article is a 435: 430: 427: 423: 422: 415: 412: 409: 406: 403: 400: 397: 394: 392: 388: 384: 381: 378: 375: 374: 361: 359:9783540397632 355: 351: 347: 343: 339: 332: 324: 320: 316: 312: 308: 304: 300: 296: 289: 281: 277: 272: 267: 263: 259: 255: 248: 240: 233: 229: 222: 218: 208: 205: 203: 200: 198: 195: 194: 185: 182: 177: 173: 171: 167: 166:recombination 163: 162:hybridization 159: 155: 151: 147: 143: 142:splits graphs 139: 135: 131: 122: 109:/fachbereiche 101:uni-tuebingen 98: 94: 90: 88: 84: 81: 78: 76: 72: 68: 66: 62: 58: 54:5.3 / 2021 52: 50: 46: 40: 38: 34: 30: 26: 24: 20: 442:expanding it 431: 341: 337: 331: 298: 294: 288: 261: 257: 247: 238: 221: 181:neighbor-net 158:neighbor-net 129: 128: 113:/lehrstuehle 105:/fakultaeten 23:Developer(s) 228:K. T. Huber 226:Dress, A.; 202:Dendroscope 119:/splitstree 111:/informatik 91:Proprietary 481:Categories 241:: 121–139. 213:References 164:or simple 130:SplitsTree 17:SplitsTree 315:1055-7903 117:/software 280:16221896 191:See also 389:at the 323:1342941 96:Website 87:License 356:  321:  313:  278:  432:This 235:(PDF) 207:MEGAN 154:split 438:stub 354:ISBN 342:2812 319:PMID 311:ISSN 276:PMID 148:, a 75:Type 346:doi 303:doi 266:doi 103:.de 483:: 352:. 317:. 309:. 297:. 274:. 262:23 260:. 256:. 237:. 136:, 469:e 462:t 455:v 444:. 362:. 348:: 325:. 305:: 299:1 282:. 268:: 121:/

Index

Developer(s)
Stable release
Preview release
Operating system
Type
Bioinformatics
License
uni-tuebingen.de/fakultaeten/mathematisch-naturwissenschaftliche-fakultaet/fachbereiche/informatik/lehrstuehle/algorithms-in-bioinformatics/software/splitstree/
phylogenetic trees
phylogenetic networks
splits graphs
sequence alignment
distance matrix
split
neighbor-net
hybridization
recombination
NEXUS file format

neighbor-net
phylogenetic network
Phylogenetic tree viewers
Dendroscope
MEGAN
K. T. Huber
"Metric spaces in pure and applied mathematics"
"Application of Phylogenetic Networks in Evolutionary Studies"
doi
10.1093/molbev/msj030
PMID

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