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Basal (phylogenetics)

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not make sense unless the appropriate taxonomic level(s) (genus, in this case) is specified. If that level cannot be specified (i.e., if the clade in question is unranked) a more detailed description of the relevant sister groups may be needed. As can be seen, the term is not reflective of ancestral states or proximity to the common ancestor of extant species.
290:", the latter of which may carry false connotations of inferiority or a lack of complexity. The terms ''deep-branching'' or ''early-branching'' are similar in meaning, and equally may misrepresent extant taxa that lie on branches connecting directly to the root node as having more ancestral character states. 2111:
Li, H.-T.; Yi, T.-S.; Gao, L.-M.; Ma, P.-F.; Zhang, T.; Yang, J.-B.; Gitzendanner, M.A.; Fritsch, P.W.; Cai, J.; Luo, Y.; Wang, H.; van der Bank, M.; Zhang, S.-D.; Wang, Q.-F.; Wang, J.; Zhang, Z.-R.; Fu, C.-N.; Yang, J.; Hollingsworth, P.M.; Chase, M.W.; Soltis, D.E.; Soltis, P.S.; Li, D.-Z. (2019).
1299:, the basal position of the Malagasy family suggests, in combination with the fossil record and the next-most-basal placement of the New Zealand family, that the superfamily originated in Africa and then migrated eastward to South America, proliferating there but surviving in the Old World only in 1161:
are both basal within Hominidae, but given that there are no nonbasal subfamilies in the cladogram it is unlikely the term would be applied to either. In general, a statement to the effect that one group (e.g., orangutans) is basal, or branches off first, within another group (e.g., Hominidae) may
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the extant taxa of a given rank within the clade; this is one reason the term basal is highly deceptive, as the lack of additional species in one clade is taken as evidence of morphological affinity with ancestral taxa. Additionally, this qualification does not ensure that the diversity of extinct
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itself. In the context of large groups, the term "basal" is often used loosely to refer to positions closer to the root than the majority, and in such cases, expressions like "very basal" can appear. A 'core clade' refers to the grouping that encompasses all constituent clades except for the basal
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Given that the deepest phylogenetic split in a group is likely to have occurred early in its history, identification of the most basal subclade(s) in a widely dispersed taxon or clade can provide valuable insight into its region of origin; however, the lack of additional species in a clade is not
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rank). The term may be equivocal in that it also refers to the direction of the root of the tree, which represents a hypothetical ancestor; this consequently may inaccurately imply that the sister group of a more species-rich clade displays ancestral features. An extant basal group may or may not
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Lindblad-Toh, K.; Wade, C.M.; Mikkelsen, T.S.; Karlsson, E.K.; Jaffe, D.B.; Kamal, M.; Clamp, M.; Chang, J.L.; Kulbokas, E.J.; Zody, M.C.; Mauceli, E.; Xie, X.; Breen, M.; Wayne, R.K.; Ostrander, E.A.; Ponting, C.P.; Galibert, F.; Smith, D.R.; Dejong, P.J.; Kirkness, E.; Alvarez, P.; Biagi, T.;
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of a larger clade to a greater degree than other groups, and is separated from that ancestor by the same amount of time as all other extant groups. However, there are cases where the unusually small size of a sister group does indeed correlate with an unusual number of ancestral traits, as in
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Yonezawa, T.; Segawa, T.; Mori, H.; Campos, P. F.; Hongoh, Y.; Endo, H.; Akiyoshi, A.; Kohno, N.; Nishida, S.; Wu, J.; Jin, H.; Adachi, J.; Kishino, H.; Kurokawa, K.; Nogi, Y.; Tanabe, H.; Mukoyama, H.; Yoshida, K.; Rasoamiaramanana, A.; Yamagishi, S.; Hayashi, Y.; Yoshida, A.; Koike, H.;
39:. The term may be more strictly applied only to nodes adjacent to the root, or more loosely applied to nodes regarded as being close to the root. Note that extant taxa that lie on branches connecting directly to the root are not more closely related to the root than any other extant taxa. 1165:
In this example, orangutans differ from the other genera in their Asian range. This fact plus their basal status provides a hint that the most recent common ancestor of extant great apes may have been Eurasian (see below), a suggestion that is consistent with other evidence. (Of course,
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try to avoid its usage because its application to extant groups is unnecessary and misleading. The term is more often applied when one branch (the one deemed "basal") is less diverse than another branch (this being the situation in which one would expect to find a basal taxon of lower
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While it is easy to identify a basal clade in such a cladogram, the appropriateness of such an identification is dependent on the accuracy and completeness of the diagram. It is often assumed in this example that the terminal branches of the cladogram depict
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and Noctilionoidea cases below). As with all other traits, the phylogeographic location of one clade that connects to the root does not provide information about the ancestral state. Examples where such unjustified inferences may have been made include:
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Krause, J.; Unger, T.; Noçon, A.; Malaspinas, A.; Kolokotronis, S.; Stiller, M.; Soibelzon, L.; Spriggs, H.; Dear, P. H.; Briggs, A. W.; Bray, S. C. E.; O'Brien, S. J.; Rabeder, G.; Matheus, P.; Cooper, A.; Slatkin, M.; Pääbo, S.; Hofreiter, M. (2008).
1235:(Opluridae) were previously thought to be basal, with an estimated divergence date from the others of ~162 million years, not long before the time of Madagascar's separation from Africa. This suggested that iguanids once had a widespread 1566:
may have similarly traveled overland from South America to colonize Australia; a fossil ratite is known from Antarctica, and South American rheas are more basal within the group than Australo-Pacific ratites.
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Schulte, J. A.; Valladares, J. P.; Larson, A. (September 2003). "Phylogenetic Relationships Within Iguanidae Inferred Using Molecular and Morphological Data and a Phylogenetic Taxonomy of Iguanian Lizards".
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Fernández-Mazuecos, M.; Blanco-Pastor, J.L.; Juan, A.; Carnicero, P.; Forrest, A.; Alarcón, M.; Vargas, P.; Glover, B.J. (2019). "Macroevolutionary dynamics of nectar spurs, a key evolutionary innovation".
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are present in South Africa, Australia, New Zealand and Chile. The most basal clade is South African; DNA sequence evidence indicates that after their South American ancestors reached South Africa, they
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evidence that it carries the ancestral state for most traits. Most deceptively, people often believe that the direction of migration away from the area of origin can also be inferred (as in the
380:, consisting of the most species, genus, family and order within the group that are sister to all other angiosperms (out of a total of about 250,000 angiosperm species). The traits of 1259:, having only diverged 60 million years ago following a likely rafting event of their own. Due to this, neither of the Old World "iguanids" are thought to represent basal lineages. 2834:; Boundy, J.; Lawson, R. (June 2001). "The Phylogenetic Relationships of Asian Coral Snakes (Elapidae: Calliophis and Maticora) Based on Morphological and Molecular Characters". 1554:, with about 120 extant species, suggesting a South American origin for the group. This is consistent with the finding of a fossil from the South American family in Antarctica. 1432:
Greater diversification of a clade may also be associated with colonization of a new land mass, especially if larger or less competitive than the ancestral land mass; see the
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comprise about 16 species in Asia and over 65 species in the Americas. However, none of the American clades are basal, implying that the group's ancestry was in the Old World.
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Teeling, E. C.; Springer, M.; Madsen, O.; Bates, P.; O'Brien, S.; Murphy, W. (2005-01-28). "A Molecular Phylogeny for Bats Illuminates Biogeography and the Fossil Record".
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Okajima, Y.; Kumazawa, Y. (2009-07-15). "Mitogenomic perspectives into iguanid phylogeny and biogeography: Gondwanan vicariance for the origin of Madagascan oplurines".
388:), of any living angiosperm" as well as "simple, separate flower parts of indefinite numbers, and unsealed carpels". However, those traits are a mix of archaic and 1462:
That is, in the diagram below, both basal clades #1 and #2 are more basal than non-basal clade #1, which in turn is more basal than non-basal clades #2 and #3.
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Moya-Sola, S.; Alba, D. M.; Almecija, S.; Casanovas-Vilar, I.; Kohler, M.; De Esteban-Trivigno, S.; Robles, J. M.; Galindo, J.; Fortuny, J. (2009-06-16).
1316:, suggesting a North American origin of the nearly worldwide group. This is consistent with fossil evidence indicating a North American origin for the 384:
are regarded as providing significant insight into the evolution of flowering plants; for example, it has "the most primitive wood (consisting only of
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RamĂ­rez-Barahona, S.; Sauquet, H.; MagallĂłn, S. (2020). "The delayed and geographically heterogeneous diversification of flowering plant families".
1498:; i.e., in this case the geographic location of the basal clade is not thought to provide evidence for the locale in which angiosperms originated. 2380: 2993:"First fossil frog from Antarctica: implications for Eocene high latitude climate conditions and Gondwanan cosmopolitanism of Australobatrachia" 2727:"Molecular and morphological analysis of the critically endangered Fijian iguanas reveals cryptic diversity and a complex biogeographic history" 1423:
is the basal genus of family Hominidae. The two basal clades of the latter both have the highest rank of subfamily, i.e. Homininae and Ponginae.
392:(derived) features that have only been sorted out via comparison with other angiosperms and their positions within the phylogenetic tree (the 2893:"A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians" 2517: 42:
While there must always be two or more equally "basal" clades sprouting from the root of every cladogram, those clades may differ widely in
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is an important clue that its origin was in South America. This conclusion is consistent with the fact that the South American order
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Wang, Xiaoming; Tedford, Richard; Taylor, Beryl (1999-11-17). "Phylogenetic systematics of the Borophaginae (Carnivora, Canidae)".
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could potentially also be helpful in this respect, but is absent in this case). The cladogram below is based on RamĂ­rez-Barahona
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cannot be objectively applied to clades of organisms, but tends to be applied selectively and more controversially to groups or
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Nilsson, M. A.; Churakov, G.; Sommer, M.; Van Tran, N.; Zemann, A.; Brosius, J.; Schmitz, J. (2010-07-27). Penny, David (ed.).
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Since a lineage is a linear chain of descent, all lineages within a clade can be traced back not only to the root, but to the
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Meaning the lowest taxonomic ranks of the respective clades; the highest ranks should be the same (assuming they are ranked).
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are nested deeply within American iguanids, having apparently colonized their isolated range after an epic 10,000 km
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Kuntner, M.; Ceccarelli, F. S.; Opell, B. D.; Haddad, C. R.; Raven, Robert J.; Soto, E. M.; RamĂ­rez, M. J. (2016-10-12).
1595: 1198: 2159: 3544: 2027:"The Platypus Is in Its Place: Nuclear Genes and Indels Confirm the Sister Group Relation of Monotremes and Therians" 727: 705: 1941:"Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary" 1525:, which is presumed to have served as a way station on the migration route to Australia before the final breakup of 698: 130:
A basal group in the stricter sense forms a sister group to the rest of the larger clade, as in the following case:
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Jenner, Ronald A (2006). "Unburdening evo-devo: ancestral attractions, model organisms, and basal baloney".
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Brockman, W.; Butler, J.; Chin, C.-W.; Cook, A.; Cuff, J.; Daly, M.J.; Decaprio, D.; et al. (2005).
2548:"Around the World in Eight Million Years: Historical Biogeography and Evolution of the Spray Zone Spider 2286: 87: 2932:
Feng, Y.-J.; Blackburn, D.C.; Liang, D.; Hillis, D.M.; Wake, D.B.; Cannatella, D.C.; Zhang, P. (2017).
1243:, less isolated Old World iguanids became extinct through competition with other lizard groups (e.g., 3739: 3665: 287: 90:
should not be imputed to the members of a less species-rich basal clade without additional evidence.
3056:"Phylogenomics and Morphology of Extinct Paleognaths Reveal the Origin and Evolution of the Ratites" 1268:
Extant australidelphian marsupials constitute about 240 species in Australasia and one species (the
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Heard, S.B.; Hauser, D.L. (1995). "Key evolutionary innovations and their ecological mechanisms".
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Goin, F. J.; Zimicz, N.; Reguero, M. A.; Santillana, S. N.; Marenssi, S. A.; Moly, J. J. (2007).
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Tambussi, C.P.; Noriega, J.I.; Gazdzicki, A.; Tatur, A.; Reguero, M.A.; Vizcaino, S.F. (1994).
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MaClatchy, L.; Gebo, D.; Kityo, R.; Pilbeam, D. (2000). "Postcranial functional morphology of
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inferred from nuclear DNA sequence data, showing the basal position of the Malagasy family
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has been termed the basal genus. However, if the analysis is not restricted to genera, the
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Krell, Frank-T; Cranston, Peter S. (2004). "Which side of the tree is more basal?".
1661: 3574: 3528: 3307: 3270: 3251:"Genome sequence, comparative analysis and haplotype structure of the domestic dog" 3220: 3210: 3153: 3067: 3022: 3012: 2963: 2953: 2904: 2787: 2746: 2738: 2699: 2656: 2620: 2581: 2571: 2488: 2477:"Orangutan positional behavior and the nature of arboreal locomotion in Hominoidea" 2449: 2407: 2397: 2346: 2336: 2298: 2252: 2196: 2121: 2091: 2038: 1999: 1962: 1952: 1904: 1819: 1811: 1787: 1767: 1732: 1689: 1639: 1399: 1269: 662: 472: 279: 3675: 3215: 3111: 2576: 2341: 1547: 1370: 1325: 1277: 1273: 1239:
distribution; after the Malagasy and New World representatives were separated by
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all the way back to South America over an interval of about 8 million years.
967: 947: 806: 792: 582: 365: 3097:"Ratite bird from the Paleogene La Meseta Formation, Seymour Island, Antarctica" 2909: 2892: 2792: 2775: 1472: 1377:). Meanwhile, the other (unranked) sister basal clade has about 250,000 species. 1008:
are a sister group to Homininae and are the basal genus in the great ape family
3649: 3017: 2624: 2611: 2303: 1693: 1551: 1522: 1512: 1453:, but its specializations for a bamboo diet are not ancestral ursid characters. 1288: 818: 79: 43: 3072: 3055: 2200: 2125: 1908: 1736: 3806: 3644: 3614: 3521: 3398: 2801: 1878: 1252: 525: 393: 369: 283: 119: 20: 3157: 2958: 2402: 2043: 1957: 1800: 330:, a clade of mammals with just five species, and the archaic anatomy of the 3749: 3695: 3690: 3685: 3670: 3478: 3473: 3357:"Interpreting the Tree Diagram or List of Subgroups on a Tree of Life Page" 3284: 3234: 3165: 3081: 3036: 2977: 2918: 2809: 2760: 2742: 2632: 2595: 2502: 2461: 2453: 2421: 2360: 2327: 2266: 2257: 2240: 2208: 2133: 2052: 1976: 1916: 1833: 1779: 1750:
Engel, M.S.; Grimaldi, D.A. (2004). "New light shed on the oldest insect".
1701: 1653: 1516: 1374: 1321: 1292: 1256: 1248: 426: 335: 106: 83: 2323:"Tracking Marsupial Evolution Using Archaic Genomic Retroposon Insertions" 3744: 3437: 2287:"The number of known plants species in the world and its annual increase" 1446: 1296: 1281: 1262: 822: 796: 449: 412: 298: 82:' implies some degree of correlation between evolutionary innovation and 3275: 3250: 1990:
McLellan, Bruce; Reiner, David C. (1994). "A Review of Bear Evolution".
1771: 86:. However, such a correlation does not make a given case predicable, so 3422: 2847: 2711: 2493: 2476: 2096: 2067: 2011: 1824: 1481:
refers to a lineage connecting a common ancestor with a single variant
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thought to possess ancestral characters, or to such presumed ancestral
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Philosophical Transactions of the Royal Society B: Biological Sciences
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Herrera-Flores, J. A.; Stubbs, T. L.; Benton, M. J.; Ruta, M. (2017).
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Similarly, among australobatrachian frogs, the South American family
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represents the most basal extant species, genus and subfamily within
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are entirely Asiatic.) However, orangutans also differ from African
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clade(s) of the lowest rank within a larger clade, exemplified by
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lifestyle, a trait generally viewed as ancestral among the apes.
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Keogh, J. S.; Edwards, D. L; Fisher, R. N; Harlow, P. S (2008).
2068:"Macroevolutionary patterns in Rhynchocephalia: is the tuatara ( 1677: 1546:
as the monito del monte), is basal to the Australasian families
825:. Locations with only fossil members are indicated by red stars. 3450: 3054:
Akishinonomiya, F.; Willerslev, E.; Hasegawa, M. (2016-12-15).
2518:"Seafaring Spiders Made It around the World—in 8 Million Years" 2186: 2026: 1563: 1508: 1482: 1244: 882: 753: 3187:
Gunnell, G. F.; Simmons, N. B.; Seiffert, E. R. (2014-02-04).
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Relationship of biogeography and phylogeny of bat superfamily
3579: 3507: 3094: 2320: 2241:"The plant tree of life: an overview and some points of view" 1391: 1228: 855: 757: 400:(2020), with species counts taken from the source indicated. 351: 71: 2545: 2112:"Origin of angiosperms and the puzzle of the Jurassic gap". 1623: 1394:
and the other basal clade(s) might have the higher ranks of
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Welt, Rachel S.; Raxworthy, Christopher J. (2022-02-01).
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as a whole (the other two canid subfamilies, the extinct
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These conclusions have been supported by the finding of
122:. No extant taxon is closer to the root than any other. 2645: 1722: 1626:"Do early branching lineages signify ancestral traits?" 1596:"For the love of trees: The ancestors are not among us" 1433: 3186: 1794: 282:
themselves. In describing characters, "ancestral" or "
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Dogs, Their Fossil Relatives and Evolutionary History
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Gibbons, J. R. H. (1981-07-31). "The Biogeography of
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coral snake, marsupial and noctilionoid bat examples
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that has the lowest rank of all basal clades within
2990: 1369:(that is also the sole living representative of an 3300:Bulletin of the American Museum of Natural History 1485:to a branch ancestor with two descendant variants. 3297: 2238: 1419:is the basal genus of subfamily Homininae, while 760:. These five species form a clade, the subfamily 267:taxa (which may be poorly known) is represented. 3804: 3241: 2239:Palmer, J.D.; Soltis, D.E.; Chase, M.W. (2004). 791:data shows the basal position of South American 3048: 3046: 2938:Proceedings of the National Academy of Sciences 2608: 1328:, the latter being basal in Canidae, were both 2541: 2539: 2474: 2316: 2314: 1989: 1365:, in which one basal clade is a single extant 1219:) are distributed throughout the Americas, on 3383: 3331:. Columbia University Press. pp. 23–31. 2824: 2773: 2429: 2367: 2234: 2232: 2230: 2228: 2226: 1890: 1888: 1749: 3088: 3043: 2991:Mörs, T.; Reguero, M.; Vasilyan, D. (2020). 2867:Revista de la AsociaciĂłn GeolĂłgica Argentina 2285:Christenhusz, M. J. M.; Byng, J. W. (2016). 2153: 2151: 1542:, with 5 extant species (living in the same 748:(eastern and western) are a sister group to 3324: 3180: 3129: 2639: 2602: 2536: 2311: 1854: 799:, and the basal position of South American 3390: 3376: 2890: 2475:Thorpe, S. K. S.; Crompton, R. H. (2006). 2468: 2223: 2059: 2024: 2018: 1931: 1885: 1863:. Princeton University Press. p. 57. 3274: 3224: 3214: 3071: 3026: 3016: 2967: 2957: 2908: 2884: 2791: 2750: 2718: 2585: 2575: 2509: 2492: 2481:American Journal of Physical Anthropology 2411: 2401: 2350: 2340: 2302: 2256: 2148: 2110: 2095: 2042: 1966: 1956: 1823: 1643: 728:Learn how and when to remove this message 3318: 3291: 2984: 2925: 1848: 1743: 1716: 1312:(gray and island foxes) is basal in the 1291:has over 200 species in the Neotropics, 812: 778: 691:This section includes a list of general 350: 2681: 2675: 1857:"Phylogenetics and the History of Life" 1624:Crisp, Michael D.; Cook, Lyn G (2005). 3805: 2104: 1894: 3371: 2897:Molecular Phylogenetics and Evolution 2780:Molecular Phylogenetics and Evolution 2515: 2157: 1593: 1359: 293:Despite the ubiquity of the usage of 198: Non-basal clade #2   3785: 2854: 1673: 1671: 1619: 1617: 1615: 1589: 1587: 1585: 1583: 677: 1992:Bears: Their Biology and Management 346: 13: 1231:in the western South Pacific. The 1182:Relevance to biogeographic history 697:it lacks sufficient corresponding 376:in the southwestern Pacific, is a 360:, the most basal extant angiosperm 14: 3824: 3397: 3349: 2891:Pyron, R.A.; Wiens, J.J. (2011). 1668: 1631:Trends in Ecology & Evolution 1612: 1580: 378:basal clade of extant angiosperms 3784: 3773: 3772: 3625:Phylogenetic comparative methods 3449: 3325:Wang, X.; Tedford, R.H. (2008). 1861:The Princeton Guide to Evolution 1645:10.1111/j.0307-6970.2004.00262.x 682: 3630:Phylogenetic niche conservatism 2767: 2031:Molecular Biology and Evolution 1983: 1897:Development Genes and Evolution 1855:Baum, D. A. (4 November 2013). 1557: 1532: 1501: 1488: 1465: 1456: 1439: 1426: 1412: 286:" are preferred to "basal" or " 2189:Nature Ecology & Evolution 1405: 1380: 1352: 1343: 805:within otherwise Australasian 1: 1573: 1494:New Caledonia is viewed as a 673: 322:reproduction and nipple-less 3216:10.1371/journal.pone.0086712 3110:(1–2): 15–20. Archived from 2577:10.1371/journal.pone.0163740 2342:10.1371/journal.pbio.1000436 1594:Smith, Stacey (2016-09-19). 7: 3550:Phylogenetic reconciliation 3457:Evolutionary biology portal 3413:Computational phylogenetics 2910:10.1016/j.ympev.2011.06.012 2793:10.1016/j.ympev.2021.107345 2160:"What's so primitive about 2158:Essig, F. B. (2014-07-01). 1280:is basal within infraclass 787:of marsupials derived from 402: 341: 270:In phylogenetics, the term 132: 16:Root of a phylogenetic tree 10: 3829: 3018:10.1038/s41598-020-61973-5 2625:10.1016/j.gene.2008.06.011 2442:Journal of Human Evolution 2304:10.11646/phytotaxa.261.3.1 2245:American Journal of Botany 1694:10.1016/j.tree.2004.11.010 1287:While the bat superfamily 1157:Subfamilies Homininae and 3768: 3740:Phylogenetic nomenclature 3732: 3706: 3658: 3600: 3537: 3466: 3444: 3405: 3073:10.1016/j.cub.2016.10.029 2201:10.1038/s41559-020-1241-3 2126:10.1038/s41477-019-0421-0 2025:Van Rheede, Teun (2005). 1909:10.1007/s00427-006-0084-5 1737:10.1080/10292389509380518 1118: 1089: 1072: 1065: 1058: 1037: 1025: 965: 945: 938: 900: 880: 873: 853: 846: 839: 764:(African apes), of which 596: 580: 573: 539: 523: 516: 500: 493: 486: 470: 463: 447: 440: 424: 417: 211: Non-basal clade #3 209: 196: 189: 178: Non-basal clade #1 176: 169: 153: 146: 97:is more basal than clade 3361:Tree of Life Web Project 2552:(Araneae: Anyphaenidae)" 2516:Kukso, F. (2016-11-08). 1945:BMC Evolutionary Biology 1336: 1249:western Pacific iguanids 601:(about 175,000 species) 125: 54:is a basal clade within 33:rooted phylogenetic tree 27:is the direction of the 3620:Molecular phylogenetics 3570:Distance-matrix methods 3418:Molecular phylogenetics 3158:10.1126/science.1105113 2959:10.1073/pnas.1704632114 2403:10.1073/pnas.0811730106 1958:10.1186/1471-2148-8-220 712:more precise citations. 544:(about 70,000 species) 338:with a single species. 3640:Phylogenetics software 3554:Probabilistic methods 3503:Long branch attraction 2743:10.1098/rstb.2008.0120 2692:Journal of Herpetology 2454:10.1006/jhev.2000.0407 2438:Morotopithecus bishopi 2258:10.3732/ajb.91.10.1437 1511:fossil remains of the 1056: Homininae  826: 810: 505:(about 9,000 species) 361: 3433:Evolutionary taxonomy 3104:Polish Polar Research 2044:10.1093/molbev/msj064 1681:Systematic Entomology 1600:For the love of trees 1196:Spiders of the genus 1174:in their more highly 816: 782: 776:clade is also basal. 354: 105:is a subgroup of the 3592:Three-taxon analysis 3498:Phylogenetic network 1540:Calyptocephalellidae 382:Amborella trichopoda 357:Amborella trichopoda 309:last common ancestor 88:ancestral characters 78:. The concept of a ' 74:of that rank within 66:may be described as 3635:Phylogenetic signal 3276:10.1038/nature04338 3267:2005Natur.438..803L 3207:2014PLoSO...986712G 3150:2005Sci...307..580T 3009:2020NatSR..10.5051M 2950:2017PNAS..114E5864F 2944:(29): E5864–E5870. 2737:(1508): 3413–3426. 2568:2016PLoSO..1163740C 2523:Scientific American 2394:2009PNAS..106.9601M 2088:2017Palgy..60..319H 2072:) a living fossil?" 2070:Sphenodon punctatus 1772:10.1038/nature02291 1764:2004Natur.427..627E 528:(about 80 species) 475:(about 95 species) 452:(about 90 species) 334:, a basal clade of 3563:Bayesian inference 3558:Maximum likelihood 2997:Scientific Reports 2494:10.1002/ajpa.20422 2097:10.1111/pala.12284 1725:Historical Biology 1413:great apes example 1332:to North America). 1293:two in New Zealand 1205:dispersed eastward 827: 811: 585:(about 6 species) 362: 93:In general, clade 3800: 3799: 3545:Maximum parsimony 3538:Inference methods 3486:Phylogenetic tree 3338:978-0-231-13528-3 3261:(7069): 803–819. 3144:(5709): 580–584. 2388:(24): 9601–9606. 2251:(10): 1437–1445. 1870:978-1-4008-4806-5 1816:10.1111/nph.15654 1758:(6975): 627–630. 1445:For example, the 1297:two in Madagascar 1154: 1153: 1145: 1144: 1136: 1135: 1107: 1106: 1001: 1000: 992: 991: 983: 982: 927: 926: 918: 917: 785:phylogenetic tree 738: 737: 730: 671: 670: 663:Basal angiosperms 655: 654: 646: 645: 637: 636: 628: 627: 619: 618: 610: 609: 562: 561: 553: 552: 259: 258: 247: 246: 238: 237: 229: 228: 220: 219: 48:species diversity 3820: 3788: 3787: 3776: 3775: 3575:Neighbor-joining 3529:Ghost population 3459: 3454: 3453: 3392: 3385: 3378: 3369: 3368: 3364: 3343: 3342: 3322: 3316: 3315: 3295: 3289: 3288: 3278: 3245: 3239: 3238: 3228: 3218: 3184: 3178: 3177: 3133: 3127: 3126: 3124: 3122: 3116: 3101: 3092: 3086: 3085: 3075: 3050: 3041: 3040: 3030: 3020: 2988: 2982: 2981: 2971: 2961: 2929: 2923: 2922: 2912: 2888: 2882: 2881: 2879: 2878: 2858: 2852: 2851: 2832:Slowinski, J. B. 2828: 2822: 2821: 2795: 2771: 2765: 2764: 2754: 2722: 2716: 2715: 2679: 2673: 2672: 2643: 2637: 2636: 2606: 2600: 2599: 2589: 2579: 2562:(10): e0163740. 2543: 2534: 2533: 2531: 2530: 2513: 2507: 2506: 2496: 2472: 2466: 2465: 2433: 2427: 2425: 2415: 2405: 2371: 2365: 2364: 2354: 2344: 2318: 2309: 2308: 2306: 2282: 2271: 2270: 2260: 2236: 2221: 2220: 2195:(9): 1232–1238. 2184: 2178: 2177: 2175: 2174: 2168:Botany Professor 2155: 2146: 2145: 2108: 2102: 2101: 2099: 2063: 2057: 2056: 2046: 2022: 2016: 2015: 1987: 1981: 1980: 1970: 1960: 1935: 1929: 1928: 1903:(7–8): 385–394. 1892: 1883: 1882: 1852: 1846: 1845: 1827: 1810:(2): 1123–1138. 1798: 1792: 1791: 1747: 1741: 1740: 1720: 1714: 1713: 1675: 1666: 1665: 1647: 1621: 1610: 1609: 1607: 1606: 1591: 1567: 1561: 1555: 1544:Valdivian forest 1536: 1530: 1505: 1499: 1492: 1486: 1469: 1463: 1460: 1454: 1443: 1437: 1430: 1424: 1409: 1403: 1384: 1378: 1356: 1350: 1347: 1314:canine subfamily 1270:monito del monte 1247:). In contrast, 1068: 1067: 1061: 1060: 1028: 1027: 1016: 1015: 968:Western gorillas 952:Gorilla beringei 948:Eastern gorillas 941: 940: 876: 875: 849: 848: 842: 841: 830: 829: 733: 726: 722: 719: 713: 708:this section by 699:inline citations 686: 685: 678: 576: 575: 519: 518: 496: 495: 489: 488: 473:Austrobaileyales 466: 465: 443: 442: 420: 419: 408: 407: 403: 372:, restricted to 347:Flowering plants 192: 191: 172: 171: 158: 149: 148: 138: 137: 133: 3828: 3827: 3823: 3822: 3821: 3819: 3818: 3817: 3803: 3802: 3801: 3796: 3764: 3728: 3702: 3676:Symplesiomorphy 3654: 3596: 3533: 3462: 3455: 3448: 3442: 3406:Relevant fields 3401: 3396: 3355: 3352: 3347: 3346: 3339: 3323: 3319: 3296: 3292: 3246: 3242: 3185: 3181: 3134: 3130: 3120: 3118: 3114: 3099: 3093: 3089: 3060:Current Biology 3051: 3044: 2989: 2985: 2930: 2926: 2889: 2885: 2876: 2874: 2859: 2855: 2829: 2825: 2772: 2768: 2723: 2719: 2704:10.2307/1563429 2680: 2676: 2644: 2640: 2607: 2603: 2544: 2537: 2528: 2526: 2514: 2510: 2473: 2469: 2434: 2430: 2372: 2368: 2335:(7): e1000436. 2319: 2312: 2283: 2274: 2237: 2224: 2185: 2181: 2172: 2170: 2156: 2149: 2109: 2105: 2064: 2060: 2023: 2019: 2004:10.2307/3872687 1988: 1984: 1936: 1932: 1893: 1886: 1871: 1853: 1849: 1804:New Phytologist 1799: 1795: 1748: 1744: 1721: 1717: 1676: 1669: 1622: 1613: 1604: 1602: 1592: 1581: 1576: 1571: 1570: 1562: 1558: 1548:Limnodynastidae 1537: 1533: 1513:microbiotherian 1506: 1502: 1493: 1489: 1470: 1466: 1461: 1457: 1444: 1440: 1431: 1427: 1410: 1406: 1385: 1381: 1357: 1353: 1348: 1344: 1339: 1326:Hesperocyoninae 1278:Didelphimorphia 1274:Australidelphia 1184: 1155: 1146: 1137: 1108: 1002: 993: 984: 972:Gorilla gorilla 928: 919: 907:Pan troglodytes 807:Australidelphia 793:Didelphimorphia 734: 723: 717: 714: 704:Please help to 703: 687: 683: 676: 667: 666: 656: 647: 638: 629: 620: 611: 583:Ceratophyllales 563: 554: 366:flowering plant 349: 344: 255: 254: 248: 239: 230: 221: 156: 128: 84:diversification 31:(or root) of a 17: 12: 11: 5: 3826: 3816: 3815: 3798: 3797: 3795: 3794: 3782: 3769: 3766: 3765: 3763: 3762: 3757: 3752: 3747: 3742: 3736: 3734: 3730: 3729: 3727: 3726: 3721: 3716: 3710: 3708: 3704: 3703: 3701: 3700: 3699: 3698: 3693: 3688: 3680: 3679: 3678: 3673: 3662: 3660: 3656: 3655: 3653: 3652: 3650:Phylogeography 3647: 3642: 3637: 3632: 3627: 3622: 3617: 3612: 3604: 3602: 3601:Current topics 3598: 3597: 3595: 3594: 3589: 3588: 3587: 3582: 3577: 3567: 3566: 3565: 3560: 3552: 3547: 3541: 3539: 3535: 3534: 3532: 3531: 3526: 3525: 3524: 3514: 3505: 3500: 3495: 3494: 3493: 3483: 3482: 3481: 3470: 3468: 3467:Basic concepts 3464: 3463: 3461: 3460: 3445: 3443: 3441: 3440: 3435: 3430: 3425: 3420: 3415: 3409: 3407: 3403: 3402: 3395: 3394: 3387: 3380: 3372: 3366: 3365: 3351: 3350:External links 3348: 3345: 3344: 3337: 3317: 3290: 3240: 3179: 3128: 3087: 3042: 2983: 2924: 2903:(2): 543–583. 2883: 2853: 2842:(2): 233–245. 2823: 2766: 2717: 2698:(3): 255–273. 2690:, from Fiji". 2674: 2655:(3): 399–419. 2638: 2619:(1–2): 28–35. 2601: 2535: 2508: 2487:(3): 384–401. 2467: 2448:(2): 159–183. 2428: 2366: 2310: 2297:(3): 201–217. 2272: 2222: 2179: 2147: 2120:(5): 461–470. 2103: 2082:(3): 319–328. 2058: 2037:(3): 587–597. 2017: 1982: 1930: 1884: 1869: 1847: 1793: 1742: 1731:(2): 151–173. 1715: 1688:(3): 279–281. 1667: 1638:(3): 122–128. 1611: 1578: 1577: 1575: 1572: 1569: 1568: 1556: 1552:Myobatrachidae 1531: 1500: 1487: 1473:origin of life 1464: 1455: 1438: 1425: 1404: 1379: 1351: 1341: 1340: 1338: 1335: 1334: 1333: 1304: 1289:Noctilionoidea 1285: 1266: 1260: 1233:Malagasy forms 1208: 1183: 1180: 1152: 1151: 1148: 1147: 1143: 1142: 1139: 1138: 1134: 1133: 1130: 1129: 1117: 1114: 1113: 1110: 1109: 1105: 1104: 1101: 1100: 1088: 1085: 1084: 1081: 1080: 1071: 1066: 1064: 1059: 1057: 1053: 1052: 1049: 1048: 1036: 1026: 1024: 1014: 999: 998: 995: 994: 990: 989: 986: 985: 981: 980: 977: 976: 964: 961: 960: 957: 956: 944: 939: 937: 934: 933: 930: 929: 925: 924: 921: 920: 916: 915: 912: 911: 899: 896: 895: 892: 891: 879: 874: 872: 869: 868: 865: 864: 852: 847: 845: 840: 838: 828: 819:Noctilionoidea 736: 735: 690: 688: 681: 675: 672: 669: 668: 660: 659: 657: 653: 652: 649: 648: 644: 643: 640: 639: 635: 634: 631: 630: 626: 625: 622: 621: 617: 616: 613: 612: 608: 607: 604: 603: 595: 592: 591: 588: 587: 579: 574: 572: 569: 568: 565: 564: 560: 559: 556: 555: 551: 550: 547: 546: 538: 535: 534: 531: 530: 522: 517: 515: 512: 511: 508: 507: 499: 494: 492: 487: 485: 482: 481: 478: 477: 469: 464: 462: 459: 458: 455: 454: 446: 441: 439: 436: 435: 432: 431: 423: 418: 416: 406: 348: 345: 343: 340: 257: 256: 253:Basal clade #2 252: 251: 249: 245: 244: 241: 240: 236: 235: 232: 231: 227: 226: 223: 222: 218: 217: 214: 213: 208: 205: 204: 201: 200: 195: 190: 188: 185: 184: 181: 180: 175: 170: 168: 165: 164: 161: 160: 157:Basal clade #1 152: 147: 145: 136: 127: 124: 80:key innovation 50:, or both. If 44:taxonomic rank 15: 9: 6: 4: 3: 2: 3825: 3814: 3813:Phylogenetics 3811: 3810: 3808: 3793: 3792: 3783: 3781: 3780: 3771: 3770: 3767: 3761: 3758: 3756: 3753: 3751: 3748: 3746: 3743: 3741: 3738: 3737: 3735: 3731: 3725: 3722: 3720: 3717: 3715: 3712: 3711: 3709: 3705: 3697: 3694: 3692: 3689: 3687: 3684: 3683: 3681: 3677: 3674: 3672: 3669: 3668: 3667: 3664: 3663: 3661: 3657: 3651: 3648: 3646: 3645:Phylogenomics 3643: 3641: 3638: 3636: 3633: 3631: 3628: 3626: 3623: 3621: 3618: 3616: 3615:DNA barcoding 3613: 3611: 3610: 3606: 3605: 3603: 3599: 3593: 3590: 3586: 3585:Least squares 3583: 3581: 3578: 3576: 3573: 3572: 3571: 3568: 3564: 3561: 3559: 3556: 3555: 3553: 3551: 3548: 3546: 3543: 3542: 3540: 3536: 3530: 3527: 3523: 3522:Ghost lineage 3520: 3519: 3518: 3515: 3513: 3509: 3506: 3504: 3501: 3499: 3496: 3492: 3489: 3488: 3487: 3484: 3480: 3477: 3476: 3475: 3472: 3471: 3469: 3465: 3458: 3452: 3447: 3439: 3436: 3434: 3431: 3429: 3426: 3424: 3421: 3419: 3416: 3414: 3411: 3410: 3408: 3404: 3400: 3399:Phylogenetics 3393: 3388: 3386: 3381: 3379: 3374: 3373: 3370: 3362: 3358: 3354: 3353: 3340: 3334: 3330: 3329: 3321: 3313: 3309: 3305: 3301: 3294: 3286: 3282: 3277: 3272: 3268: 3264: 3260: 3256: 3252: 3244: 3236: 3232: 3227: 3222: 3217: 3212: 3208: 3204: 3201:(2): e86712. 3200: 3196: 3195: 3190: 3183: 3175: 3171: 3167: 3163: 3159: 3155: 3151: 3147: 3143: 3139: 3132: 3117:on 2019-12-28 3113: 3109: 3105: 3098: 3091: 3083: 3079: 3074: 3069: 3065: 3061: 3057: 3049: 3047: 3038: 3034: 3029: 3024: 3019: 3014: 3010: 3006: 3002: 2998: 2994: 2987: 2979: 2975: 2970: 2965: 2960: 2955: 2951: 2947: 2943: 2939: 2935: 2928: 2920: 2916: 2911: 2906: 2902: 2898: 2894: 2887: 2872: 2868: 2864: 2857: 2849: 2845: 2841: 2837: 2836:Herpetologica 2833: 2827: 2819: 2815: 2811: 2807: 2803: 2799: 2794: 2789: 2785: 2781: 2777: 2770: 2762: 2758: 2753: 2748: 2744: 2740: 2736: 2732: 2728: 2721: 2713: 2709: 2705: 2701: 2697: 2693: 2689: 2685: 2678: 2670: 2666: 2662: 2661:10.1655/02-48 2658: 2654: 2650: 2649:Herpetologica 2642: 2634: 2630: 2626: 2622: 2618: 2614: 2613: 2605: 2597: 2593: 2588: 2583: 2578: 2573: 2569: 2565: 2561: 2557: 2553: 2551: 2550:Amaurobioides 2542: 2540: 2525: 2524: 2519: 2512: 2504: 2500: 2495: 2490: 2486: 2482: 2478: 2471: 2463: 2459: 2455: 2451: 2447: 2443: 2439: 2432: 2423: 2419: 2414: 2409: 2404: 2399: 2395: 2391: 2387: 2383: 2382: 2377: 2370: 2362: 2358: 2353: 2348: 2343: 2338: 2334: 2330: 2329: 2324: 2317: 2315: 2305: 2300: 2296: 2292: 2288: 2281: 2279: 2277: 2268: 2264: 2259: 2254: 2250: 2246: 2242: 2235: 2233: 2231: 2229: 2227: 2218: 2214: 2210: 2206: 2202: 2198: 2194: 2190: 2183: 2169: 2165: 2163: 2154: 2152: 2143: 2139: 2135: 2131: 2127: 2123: 2119: 2115: 2114:Nature Plants 2107: 2098: 2093: 2089: 2085: 2081: 2077: 2076:Palaeontology 2073: 2071: 2062: 2054: 2050: 2045: 2040: 2036: 2032: 2028: 2021: 2013: 2009: 2005: 2001: 1997: 1993: 1986: 1978: 1974: 1969: 1964: 1959: 1954: 1950: 1946: 1942: 1934: 1926: 1922: 1918: 1914: 1910: 1906: 1902: 1898: 1891: 1889: 1880: 1876: 1872: 1866: 1862: 1858: 1851: 1843: 1839: 1835: 1831: 1826: 1821: 1817: 1813: 1809: 1805: 1797: 1789: 1785: 1781: 1777: 1773: 1769: 1765: 1761: 1757: 1753: 1746: 1738: 1734: 1730: 1726: 1719: 1711: 1707: 1703: 1699: 1695: 1691: 1687: 1683: 1682: 1674: 1672: 1663: 1659: 1655: 1651: 1646: 1641: 1637: 1633: 1632: 1627: 1620: 1618: 1616: 1601: 1597: 1590: 1588: 1586: 1584: 1579: 1565: 1560: 1553: 1549: 1545: 1541: 1535: 1528: 1524: 1520: 1518: 1514: 1510: 1504: 1497: 1491: 1484: 1480: 1479: 1478:basal lineage 1474: 1468: 1459: 1452: 1448: 1442: 1435: 1429: 1422: 1418: 1414: 1408: 1401: 1397: 1393: 1389: 1386:For example, 1383: 1376: 1372: 1368: 1364: 1362: 1355: 1346: 1342: 1331: 1327: 1323: 1319: 1315: 1311: 1310: 1305: 1302: 1298: 1294: 1290: 1286: 1283: 1279: 1275: 1271: 1267: 1264: 1261: 1258: 1254: 1253:rafting event 1250: 1246: 1242: 1238: 1234: 1230: 1226: 1222: 1218: 1217: 1212: 1209: 1206: 1201: 1200: 1199:Amaurobioides 1195: 1194: 1193: 1190: 1189:Amaurobioides 1179: 1177: 1173: 1169: 1163: 1160: 1150: 1149: 1141: 1140: 1132: 1131: 1128: 1126: 1122: 1116: 1115: 1112: 1111: 1103: 1102: 1099: 1097: 1093: 1087: 1086: 1083: 1082: 1079: 1077: 1070: 1069: 1063: 1062: 1055: 1054: 1051: 1050: 1047: 1045: 1041: 1034: 1030: 1029: 1022: 1018: 1017: 1013: 1011: 1007: 997: 996: 988: 987: 979: 978: 975: 973: 969: 963: 962: 959: 958: 955: 953: 949: 943: 942: 936: 935: 932: 931: 923: 922: 914: 913: 910: 908: 904: 898: 897: 894: 893: 890: 888: 884: 878: 877: 871: 870: 867: 866: 863: 861: 857: 851: 850: 844: 843: 836: 832: 831: 824: 820: 815: 808: 804: 803: 798: 794: 790: 786: 781: 777: 775: 771: 767: 763: 759: 755: 751: 747: 743: 732: 729: 721: 718:November 2021 711: 707: 701: 700: 694: 689: 680: 679: 664: 658: 651: 650: 642: 641: 633: 632: 624: 623: 615: 614: 606: 605: 602: 600: 594: 593: 590: 589: 586: 584: 578: 577: 571: 570: 567: 566: 558: 557: 549: 548: 545: 543: 537: 536: 533: 532: 529: 527: 526:Chloranthales 521: 520: 514: 513: 510: 509: 506: 504: 498: 497: 491: 490: 484: 483: 480: 479: 476: 474: 468: 467: 461: 460: 457: 456: 453: 451: 445: 444: 438: 437: 434: 433: 430: 428: 422: 421: 414: 410: 409: 405: 404: 401: 399: 395: 394:fossil record 391: 387: 383: 379: 375: 374:New Caledonia 371: 370:Amborellaceae 367: 359: 358: 353: 339: 337: 336:lepidosaurian 333: 329: 325: 321: 317: 316: 310: 307:resemble the 305: 300: 296: 291: 289: 285: 284:plesiomorphic 281: 277: 273: 268: 265: 250: 243: 242: 234: 233: 225: 224: 216: 215: 212: 207: 206: 203: 202: 199: 194: 193: 187: 186: 183: 182: 179: 174: 173: 167: 166: 163: 162: 159: 151: 150: 143: 140: 139: 135: 134: 131: 123: 121: 120:core eudicots 116: 112: 108: 104: 100: 96: 91: 89: 85: 81: 77: 73: 69: 65: 61: 57: 53: 49: 45: 40: 38: 34: 30: 26: 22: 21:phylogenetics 3789: 3777: 3754: 3750:Sister group 3733:Nomenclature 3696:Autapomorphy 3691:Synapomorphy 3671:Plesiomorphy 3659:Group traits 3607: 3479:Cladogenesis 3474:Phylogenesis 3327: 3320: 3303: 3299: 3293: 3258: 3254: 3243: 3198: 3192: 3182: 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95:A 76:D 64:C 60:D 56:D 52:C

Index

phylogenetics
rooted phylogenetic tree
cladogram
taxonomic rank
species diversity
taxon
key innovation
diversification
ancestral characters
sister group
core eudicots
Root
lineages
traits
plesiomorphic
primitive
systematists
last common ancestor
Amborella
oviparous
lactation
monotremes
tuatara
lepidosaurian

Amborella trichopoda
flowering plant
Amborellaceae
New Caledonia
basal clade of extant angiosperms

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