Knowledge

ChEBI

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95: 78: 27: 349:
All data in the database is non-proprietary or is derived from a non-proprietary source. It is thus freely accessible and available to anyone. In addition, each data item is fully traceable and explicitly referenced to the original source. It is related in scope other databases such as
310:, etc., identifiable as a separately distinguishable entity". The molecular entities in question are either products of nature or synthetic products which have potential bioactivity. Molecules directly encoded by the genome, such as 338: 566: 515: 571: 72: 275: 89: 561: 263: 551: 193: 556: 463:
Degtyarenko K, de Matos P, Ennis M, Hastings J, Zbinden M, McNaught A, Alcántara R, Darsow M, Guedj M,
271: 307: 140: 278:(EBI). The term "molecular entity" refers to any "constitutionally or isotopically distinct 8: 408: 303: 295: 493: 468: 437: 412: 330: 498: 464: 442: 407:
de Matos P, Alcántara R, Dekker A, Ennis M, Hastings J, Haug K, Spiteri I, Turner S,
259: 55: 42: 525: 529: 520: 488: 480: 432: 424: 267: 374: 205: 67: 94: 77: 545: 524:, 2nd ed. (the "Gold Book") (1997). Online corrected version: (2006–) " 469:"ChEBI: a database and ontology for chemical entities of biological interest" 311: 533: 167: 502: 446: 363: 484: 428: 378: 323: 299: 160: 355: 359: 319: 315: 291: 283: 367: 462: 382: 351: 187: 334: 211: 120: 26: 406: 279: 270:
focused on 'small' chemical compounds, that is part of the
339:
International Union of Biochemistry and Molecular Biology
287: 413:"Chemical Entities of Biological Interest: an update" 16:
Chemical database and ontology of molecular entities
335:International Union of Pure and Applied Chemistry 543: 20:Chemical Entities of Biological Interest (ChEBI) 326:cleavage, are not as a rule included in ChEBI. 458: 456: 402: 400: 398: 333:, symbolism and terminology endorsed by the 453: 395: 337:(IUPAC) and nomenclature committee of the 492: 436: 373:ChEBI data is available through a public 567:Science and technology in Cambridgeshire 252:Chemical Entities of Biological Interest 544: 73:European Molecular Biology Laboratory 344: 13: 521:Compendium of Chemical Terminology 14: 583: 276:European Bioinformatics Institute 90:European Bioinformatics Institute 93: 76: 25: 509: 1: 572:South Cambridgeshire District 388: 7: 479:(Database issue): D344-50. 423:(Database issue): D249-54. 10: 588: 272:Open Biomedical Ontologies 322:derived from proteins by 241: 231: 226: 204: 199: 186: 159: 135: 115: 110: 102: 85: 66: 61: 48: 38: 33: 24: 385:endpoint and downloads. 534:10.1351/goldbook.M03986 473:Nucleic Acids Research 417:Nucleic Acids Research 562:Chemical nomenclature 552:Biological databases 274:(OBO) effort at the 21: 557:Chemical databases 485:10.1093/nar/gkm791 429:10.1093/nar/gkp886 268:molecular entities 56:chemical compounds 19: 260:chemical database 249: 248: 43:Chemical database 579: 536: 526:molecular entity 513: 507: 506: 496: 460: 451: 450: 440: 404: 345:Scope and access 254:, also known as 245:Manually curated 222: 219: 217: 215: 213: 182: 179: 177: 175: 173: 171: 169: 155: 152: 150: 148: 146: 144: 142: 131: 128: 126: 124: 122: 103:Primary citation 98: 97: 81: 80: 29: 22: 18: 587: 586: 582: 581: 580: 578: 577: 576: 542: 541: 540: 539: 514: 510: 461: 454: 405: 396: 391: 375:web application 347: 242:Curation policy 233: 210: 166: 139: 119: 92: 75: 68:Research center 50: 17: 12: 11: 5: 585: 575: 574: 569: 564: 559: 554: 538: 537: 508: 452: 393: 392: 390: 387: 346: 343: 247: 246: 243: 239: 238: 235: 229: 228: 224: 223: 208: 202: 201: 197: 196: 191: 184: 183: 164: 157: 156: 137: 133: 132: 117: 113: 112: 108: 107: 106:de Matos et al 104: 100: 99: 87: 83: 82: 70: 64: 63: 59: 58: 52: 46: 45: 40: 36: 35: 31: 30: 15: 9: 6: 4: 3: 2: 584: 573: 570: 568: 565: 563: 560: 558: 555: 553: 550: 549: 547: 535: 531: 527: 523: 522: 517: 512: 504: 500: 495: 490: 486: 482: 478: 474: 470: 466: 459: 457: 448: 444: 439: 434: 430: 426: 422: 418: 414: 410: 403: 401: 399: 394: 386: 384: 380: 376: 371: 369: 365: 361: 357: 353: 342: 340: 336: 332: 327: 325: 321: 317: 313: 312:nucleic acids 309: 305: 301: 297: 293: 289: 285: 281: 277: 273: 269: 265: 261: 257: 253: 244: 240: 236: 230: 227:Miscellaneous 225: 221: 209: 207: 203: 198: 195: 192: 189: 185: 181: 165: 162: 158: 154: 138: 134: 130: 118: 114: 109: 105: 101: 96: 91: 88: 84: 79: 74: 71: 69: 65: 60: 57: 53: 47: 44: 41: 37: 32: 28: 23: 519: 511: 476: 472: 420: 416: 379:web services 372: 364:MetaboLights 348: 341:(NC-IUBMB). 331:nomenclature 328: 255: 251: 250: 232:Data release 178:/webServices 136:Download URL 465:Ashburner M 409:Steinbeck C 329:ChEBI uses 324:proteolytic 300:radical ion 161:Web service 39:Description 546:Categories 389:References 356:ChemSpider 151:/databases 86:Laboratory 49:Data types 308:conformer 234:frequency 503:17932057 467:(2008). 447:19854951 411:(2010). 360:DrugBank 320:peptides 316:proteins 292:ion pair 284:molecule 264:ontology 190:endpoint 51:captured 494:2238832 438:2808869 368:PubChem 304:complex 296:radical 258:, is a 237:monthly 194:BIO2RDF 116:Website 62:Contact 34:Content 501:  491:  445:  435:  383:SPARQL 352:ChEMBL 220:/chebi 188:Sparql 176:/chebi 153:/chebi 129:/chebi 111:Access 54:Small 516:IUPAC 256:ChEBI 200:Tools 499:PMID 443:PMID 366:and 318:and 280:atom 262:and 214:.ebi 170:.ebi 149:/pub 143:.ebi 123:.ebi 530:doi 528:". 489:PMC 481:doi 433:PMC 425:doi 288:ion 266:of 218:.uk 216:.ac 212:www 206:Web 180:.do 174:.uk 172:.ac 168:www 163:URL 147:.uk 145:.ac 141:ftp 127:.uk 125:.ac 121:www 548:: 518:, 497:. 487:. 477:36 475:. 471:. 455:^ 441:. 431:. 421:38 419:. 415:. 397:^ 381:, 377:, 370:. 362:, 358:, 354:, 314:, 306:, 302:, 298:, 294:, 290:, 286:, 282:, 532:: 505:. 483:: 449:. 427::

Index


Chemical database
chemical compounds
Research center
European Molecular Biology Laboratory
European Union
European Bioinformatics Institute
United Kingdom
www.ebi.ac.uk/chebi
ftp.ebi.ac.uk/pub/databases/chebi
Web service
www.ebi.ac.uk/chebi/webServices.do
Sparql
BIO2RDF
Web
www.ebi.ac.uk/chebi
chemical database
ontology
molecular entities
Open Biomedical Ontologies
European Bioinformatics Institute
atom
molecule
ion
ion pair
radical
radical ion
complex
conformer
nucleic acids

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