Knowledge

Simple Modular Architecture Research Tool

Source ๐Ÿ“

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to detect protein domains in protein sequences. The most recent release of SMART contains 1,204 domain models. Data from SMART was used in creating the
89: 46: 39: 61: 68: 625: 75: 57: 567: 279: 179: 82: 618: 108: 599: 541: 649: 664: 611: 560: 267: 654: 644: 271: 469:"InterPro: an integrated documentation resource for protein families, domains and functional sites" 659: 35: 553: 135: 315: 8: 301:"SMART, a simple modular architecture research tool: identification of signaling domains" 263: 255: 319: 444: 411: 387: 362: 490: 449: 431: 392: 343: 338: 189: 480: 439: 423: 382: 374: 333: 323: 220: 300: 174: 139: 595: 537: 259: 152: 638: 525: 435: 328: 494: 453: 396: 193: 485: 468: 347: 427: 378: 582: 587: 24: 533: 511: 275: 159: 208: 467:
Mulder NJ, Apweiler R, Attwood TK, et al. (September 2002).
412:"SMART: recent updates, new developments and status in 2015" 410:
Letunic, Ivica; Doerks, Tobias; Bork, Peer (January 2015).
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Schultz J, Milpetz F, Bork P, Ponting CP (May 1998).
258:that is used in the identification and analysis of 274:collection and is also distributed as part of the 409: 360: 636: 363:"SMART 6: recent updates and new developments" 619: 561: 361:Letunic I, Doerks T, Bork P (January 2009). 460: 354: 225:Free to academics, but not commercial users 58:"Simple Modular Architecture Research Tool" 626: 612: 568: 554: 292: 594:This bioinformatics-related article is a 484: 443: 386: 337: 327: 248:Simple Modular Architecture Research Tool 109:Learn how and when to remove this message 278:database. The database is hosted by the 637: 45:Please improve this article by adding 280:European Molecular Biology Laboratory 262:within protein sequences. SMART uses 180:European Molecular Biology Laboratory 577: 520: 18: 13: 14: 676: 505: 586: 581: 524: 23: 209:http://smart.embl-heidelberg.de 403: 1: 285: 47:secondary or tertiary sources 598:. You can help Knowledge by 540:. You can help Knowledge by 422:(Database issue): D257โ€“260. 308:Proc. Natl. Acad. Sci. U.S.A 268:multiple sequence alignments 264:profile-hidden Markov models 7: 373:(Database issue): D229โ€“32. 10: 681: 576: 519: 272:Conserved Domain Database 237: 229: 219: 214: 204: 199: 185: 173: 168: 158: 146: 131: 126: 329:10.1073/pnas.95.11.5857 650:Protein classification 536:-related article is a 416:Nucleic Acids Research 34:relies excessively on 473:Brief. Bioinformatics 136:Identification scheme 665:Bioinformatics stubs 486:10.1093/bib/3.3.225 320:1998PNAS...95.5857S 256:biological database 123: 16:Biological database 428:10.1093/nar/gku949 379:10.1093/nar/gkn808 121: 655:Protein databases 645:Protein structure 607: 606: 549: 548: 367:Nucleic Acids Res 245: 244: 119: 118: 111: 93: 672: 628: 621: 614: 590: 585: 578: 570: 563: 556: 528: 521: 499: 498: 488: 464: 458: 457: 447: 407: 401: 400: 390: 358: 352: 351: 341: 331: 305: 296: 186:Primary citation 124: 120: 114: 107: 103: 100: 94: 92: 51: 27: 19: 680: 679: 675: 674: 673: 671: 670: 669: 635: 634: 633: 632: 575: 574: 517: 508: 503: 502: 465: 461: 408: 404: 359: 355: 314:(11): 5857โ€“64. 303: 297: 293: 288: 282:in Heidelberg. 260:protein domains 238:Curation policy 175:Research center 153:Protein domains 148: 140:protein domains 115: 104: 98: 95: 52: 50: 44: 40:primary sources 28: 17: 12: 11: 5: 678: 668: 667: 662: 660:Database stubs 657: 652: 647: 631: 630: 623: 616: 608: 605: 604: 591: 573: 572: 565: 558: 550: 547: 546: 529: 515: 514: 512:SMART web site 507: 506:External links 504: 501: 500: 459: 402: 353: 290: 289: 287: 284: 243: 242: 239: 235: 234: 231: 227: 226: 223: 217: 216: 212: 211: 206: 202: 201: 197: 196: 187: 183: 182: 177: 171: 170: 166: 165: 162: 156: 155: 150: 144: 143: 133: 129: 128: 117: 116: 99:September 2015 31: 29: 22: 15: 9: 6: 4: 3: 2: 677: 666: 663: 661: 658: 656: 653: 651: 648: 646: 643: 642: 640: 629: 624: 622: 617: 615: 610: 609: 603: 601: 597: 592: 589: 584: 580: 579: 571: 566: 564: 559: 557: 552: 551: 545: 543: 539: 535: 530: 527: 523: 522: 518: 513: 510: 509: 496: 492: 487: 482: 479:(3): 225โ€“35. 478: 474: 470: 463: 455: 451: 446: 441: 437: 433: 429: 425: 421: 417: 413: 406: 398: 394: 389: 384: 380: 376: 372: 368: 364: 357: 349: 345: 340: 335: 330: 325: 321: 317: 313: 309: 302: 295: 291: 283: 281: 277: 273: 269: 265: 261: 257: 253: 249: 240: 236: 232: 228: 224: 222: 218: 215:Miscellaneous 213: 210: 207: 203: 198: 195: 191: 188: 184: 181: 178: 176: 172: 167: 163: 161: 157: 154: 151: 145: 141: 137: 134: 130: 125: 113: 110: 102: 91: 88: 84: 81: 77: 74: 70: 67: 63: 60: โ€“  59: 55: 54:Find sources: 48: 42: 41: 37: 32:This article 30: 26: 21: 20: 600:expanding it 593: 542:expanding it 531: 516: 476: 472: 462: 419: 415: 405: 370: 366: 356: 311: 307: 294: 251: 247: 246: 105: 96: 86: 79: 72: 65: 53: 33: 266:built from 132:Description 639:Categories 286:References 147:Data types 69:newspapers 36:references 436:1362-4962 160:Organisms 534:database 495:12230031 454:25300481 397:18978020 276:InterPro 194:18978020 149:captured 445:4384020 388:2686533 348:9600884 316:Bibcode 254:) is a 230:Version 221:License 205:Website 169:Contact 127:Content 83:scholar 493:  452:  442:  434:  395:  385:  346:  336:  200:Access 192:  85:  78:  71:  64:  56:  532:This 339:34487 304:(PDF) 252:SMART 122:SMART 90:JSTOR 76:books 596:stub 538:stub 491:PMID 450:PMID 432:ISSN 393:PMID 344:PMID 190:PMID 138:for 62:news 481:doi 440:PMC 424:doi 383:PMC 375:doi 334:PMC 324:doi 241:Yes 164:all 38:to 641:: 489:. 475:. 471:. 448:. 438:. 430:. 420:43 418:. 414:. 391:. 381:. 371:37 369:. 365:. 342:. 332:. 322:. 312:95 310:. 306:. 49:. 627:e 620:t 613:v 602:. 569:e 562:t 555:v 544:. 497:. 483:: 477:3 456:. 426:: 399:. 377:: 350:. 326:: 318:: 250:( 233:7 142:. 112:) 106:( 101:) 97:( 87:ยท 80:ยท 73:ยท 66:ยท 43:.

Index


references
primary sources
secondary or tertiary sources
"Simple Modular Architecture Research Tool"
news
newspapers
books
scholar
JSTOR
Learn how and when to remove this message
Identification scheme
protein domains
Protein domains
Organisms
Research center
European Molecular Biology Laboratory
PMID
18978020
http://smart.embl-heidelberg.de
License
biological database
protein domains
profile-hidden Markov models
multiple sequence alignments
Conserved Domain Database
InterPro
European Molecular Biology Laboratory
"SMART, a simple modular architecture research tool: identification of signaling domains"
Bibcode

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