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Penicillin-binding proteins

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ranging in molecular weight from 40,000 to 91,000. The different PBPs occur in different numbers per cell and have varied affinities for penicillin. The PBPs are usually broadly classified into high-molecular-weight (HMW) and low-molecular-weight (LMW) categories. Proteins that have evolved from PBPs
491:, which is the major component of bacterial cell walls. Bacterial cell wall synthesis is essential to growth, cell division (thus reproduction) and maintaining the cellular structure in bacteria. Inhibition of PBPs leads to defects in cell wall structure and irregularities in cell shape, for example 550:
antibiotics because they are similar in chemical structure to the modular pieces that form the peptidoglycan. When they bind to penicillin, the β-lactam amide bond is ruptured to form a covalent bond with the catalytic serine residue at the PBPs active site. This is an irreversible reaction and
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production). These experiments change the structure of PBP by adding different amino acids into the protein, allowing for new discovery of how the drug interacts with the protein. Research on PBPs has led to the discovery of new semi-synthetic β-lactams, wherein altering the side-chains on the
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There has been a great deal of research into PBPs because of their role in antibiotics and resistance. Bacterial cell wall synthesis and the role of PBPs in its synthesis is a very good target for drugs of selective toxicity because the metabolic pathways and enzymes are unique to bacteria.
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cytoskeleton and follow its rotation around the cell, inserting petipdoglycan in an oriented manner during cell growth. In contrast, high-molecular-weight PBPs are independent from MreB and maintain cell wall integrity by detecting and repairing defects in the peptidoglycan.
522:-alanine carboxypeptidase, peptidoglycan transpeptidase, and peptidoglycan endopeptidase. In all bacteria that have been studied, enzymes have been shown to catalyze more than one of the above reactions. The enzyme has a penicillin-insensitive transglycosylase 467:
There are a large number of PBPs, usually several in each organism, and they are found as both membrane-bound and cytoplasmic proteins. For example, Spratt (1977) reports that six different PBPs are routinely detected in all strains of
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Vigouroux, Antoine; Cordier, Baptiste; Aristov, Andrey; Alvarez, Laura; Ă–zbaykal, Gizem; Chaze, Thibault; Oldewurtel, Enno Rainer; Matondo, Mariette; Cava, Felipe; Bikard, David; van Teeffelen, Sven (2020-01-06).
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PBPs normally catalyze the cross-linking of the bacterial cell wall, but they can be permanently inhibited by penicillin and other β-lactam antibiotics. (NAM = N-acetylmuramic acid; NAG = N-acetylglucosamine)
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PBPs have been shown to catalyze a number of reactions involved in the process of synthesizing cross-linked peptidoglycan from lipid intermediates and mediating the removal of
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Dion, Michael F.; Kapoor, Mrinal; Sun, Yingjie; Wilson, Sean; Ryan, Joel; Vigouroux, Antoine; Teeffelen, Sven van; Oldenbourg, Rudolf; Garner, Ethan C. (2019-05-13).
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Resistance to antibiotics has come about through overproduction of PBPs and formation of PBPs that have low affinity for penicillins (among other mechanisms such as
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original penicillin molecule has increased the affinity of PBPs for penicillin, and, thus, increased effectiveness in bacteria with developing resistance.
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Miyachiro MM, Contreras-Martel C, Dessen A (January 2020). "Penicillin-Binding Proteins (PBPS) and Bacterial Cell Wall Elongation Complexes".
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domain (involved in cross-linking of the peptide subunits) and the serine at the active site is conserved in all members of the PBP family.
572: 17: 853:"Evolution of a family of metazoan active-site-serine enzymes from penicillin-binding proteins: a novel facet of the bacterial legacy" 715: 288: 179: 1262: 851:
Peitsaro N, Polianskyte Z, Tuimala J, Pörn-Ares I, Liobikas J, Speer O, Lindholm D, Thompson J, Eriksson O (January 2008).
1304: 975:"Bacillus subtilis cell diameter is determined by the opposing actions of two distinct cell wall synthetic systems" 907:"Morphological and ultrastructural changes in bacterial cells as an indicator of antibacterial mechanism of action" 952: 276: 167: 564: 34:
Ribbon representation of the atomic structure of Penicillin Binding Protein 3 from Pseudomonas aeruginosa
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domain (involved in formation of linear glycan strands) and a penicillin-sensitive transpeptidase
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Sainsbury S, Bird L, Rao V, Shepherd SM, Stuart DI, Hunter WN, Owens RJ, Ren J (January 2011).
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strain K15 in the form of a penicillin-sensitive D-alanyl-D-alanine-cleaving transpeptidase"
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synthesis. PBPs are members of a subgroup of transpeptidase enzymes called
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The β-lactam ring is a structure common to all β-lactam antibiotics.
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Nguyen-Distèche M, Leyh-Bouille M, Ghuysen JM (October 1982).
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PBPs are all involved in the final stages of the synthesis of
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Basu J, Chattopadhyay R, Kundu M, Chakrabarti P (July 1992).
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that are characterized by their affinity for and binding of
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Macromolecular Protein Complexes II: Structure and Function
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Ubukata K, Nonoguchi R, Matsuhashi M, Konno M (May 1989).
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occur in many higher organisms and include the mammalian
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have been shown to catalyze the following reactions:
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Cushnie TP, O'Driscoll NH, Lamb AJ (December 2016).
972: 1283:Bardal SK, Waechter JE, Martin DS (January 2011). 752:"Properties of the penicillin-binding proteins of 648:: comparison of native and antibiotic-bound forms" 533:Some low-molecular-weight PBPs associate with the 448:) bind to PBPs, which are essential for bacterial 1329: 495:, pseudomulticellular forms, lesions leading to 194:Penicillin-binding protein, dimerisation domain 1244: 514:from the precursor of peptidoglycan. Purified 793: 791: 1194:gene, which encodes a methicillin-resistant 1136: 745: 743: 1142: 900: 898: 844: 693: 691: 635: 1083: 788: 49:Penicillin-binding protein, transpeptidase 1238: 1221: 1160: 1119: 1066: 1048: 1006: 930: 878: 868: 827: 771: 749: 740: 671: 895: 688: 432:. They are a normal constituent of many 408: 29: 499:formation, and eventual cell death and 14: 1330: 1198:-specific penicillin-binding protein" 911:Cellular and Molecular Life Sciences 1245:Pandey N, Cascella M (March 2020). 24: 1297:10.1016/B978-1-4377-0310-8.00018-X 1285:"Chapter 18 - Infectious Diseases" 773:10.1111/j.1432-1033.1977.tb11258.x 25: 1349: 1186:"Expression and inducibility in 820:10.1128/jb.174.14.4829-4832.1992 760:European Journal of Biochemistry 603: 591: 1313:from the original on 2020-07-05 1265:from the original on 2020-12-15 1214:10.1128/jb.171.5.2882-2885.1989 1177: 955:from the original on 2017-10-07 584: 567:(PBP2A) is responsible for the 1149:Journal of Infectious Diseases 1023: 966: 541: 13: 1: 628: 565:penicillin binding protein 2A 240:Available protein structures: 131:Available protein structures: 652:Journal of Molecular Biology 462: 7: 708:10.1007/978-3-030-28151-9_8 618: 482: 418:Penicillin-binding proteins 18:Penicillin binding proteins 10: 1354: 1143:Chambers HF (March 1999). 1043:. Jie Xiao (ed.): –51998. 750:Spratt BG (January 1977). 1247:"Beta Lactam Antibiotics" 991:10.1038/s41564-019-0439-0 923:10.1007/s00018-016-2302-2 664:10.1016/j.jmb.2010.10.024 294: 282: 262: 244: 239: 235: 223: 211: 203: 198: 193: 173: 153: 135: 130: 126: 114: 102: 90: 78: 66: 58: 53: 48: 857:BMC Evolutionary Biology 563:Presence of the protein 551:inactivates the enzyme. 1202:Journal of Bacteriology 808:Journal of Bacteriology 802:Mycobacterium smegmatis 870:10.1186/1471-2148-8-26 646:Pseudomonas aeruginosa 573:methicillin-resistant 414: 43: 1188:Staphylococcus aureus 575:Staphylococcus aureus 569:antibiotic resistance 412: 38:, image created with 33: 1289:Applied Pharmacology 446:glutamine synthetase 442:tabtoxinine-β-lactam 438:β-lactam antibiotics 1155:(Suppl 2): S353-9. 1100:Biochemical Journal 1050:10.7554/eLife.51998 979:Nature Microbiology 1338:Bacterial proteins 424:s) are a group of 415: 44: 1112:10.1042/bj2070109 917:(23): 4471–4492. 717:978-3-030-28150-2 521: 509: 456: 444:, which inhibits 407: 406: 403: 402: 289:structure summary 189: 188: 185: 184: 180:structure summary 27:Class of proteins 16:(Redirected from 1345: 1322: 1321: 1319: 1318: 1280: 1274: 1273: 1271: 1270: 1242: 1236: 1235: 1225: 1181: 1175: 1174: 1164: 1140: 1134: 1133: 1123: 1087: 1081: 1080: 1070: 1052: 1027: 1021: 1020: 1010: 985:(8): 1294–1305. 970: 964: 963: 961: 960: 934: 902: 893: 892: 882: 872: 848: 842: 841: 831: 795: 786: 785: 775: 754:Escherichia coli 747: 738: 737: 695: 686: 685: 675: 639: 607: 598:Penicillin core. 595: 519: 507: 457:-transpeptidases 454: 398: 388: 378: 368: 358: 348: 338: 328: 318: 308: 237: 236: 191: 190: 128: 127: 46: 45: 21: 1353: 1352: 1348: 1347: 1346: 1344: 1343: 1342: 1328: 1327: 1326: 1325: 1316: 1314: 1307: 1281: 1277: 1268: 1266: 1243: 1239: 1182: 1178: 1141: 1137: 1088: 1084: 1028: 1024: 971: 967: 958: 956: 903: 896: 849: 845: 814:(14): 4829–32. 796: 789: 748: 741: 718: 696: 689: 640: 636: 631: 621: 614: 608: 599: 596: 587: 544: 485: 465: 390: 380: 370: 360: 350: 340: 330: 320: 310: 300: 92:OPM superfamily 28: 23: 22: 15: 12: 11: 5: 1351: 1341: 1340: 1324: 1323: 1305: 1275: 1237: 1176: 1162:10.1086/513854 1135: 1082: 1022: 965: 894: 843: 787: 739: 716: 687: 633: 632: 630: 627: 620: 617: 616: 615: 609: 602: 600: 597: 590: 586: 583: 543: 540: 484: 481: 464: 461: 405: 404: 401: 400: 298: 292: 291: 286: 280: 279: 266: 260: 259: 249: 242: 241: 233: 232: 227: 221: 220: 215: 209: 208: 205: 201: 200: 196: 195: 187: 186: 183: 182: 177: 171: 170: 157: 151: 150: 140: 133: 132: 124: 123: 118: 112: 111: 106: 100: 99: 94: 88: 87: 82: 76: 75: 70: 64: 63: 60: 56: 55: 51: 50: 26: 9: 6: 4: 3: 2: 1350: 1339: 1336: 1335: 1333: 1312: 1308: 1306:9781437703108 1302: 1298: 1294: 1290: 1286: 1279: 1264: 1260: 1256: 1252: 1248: 1241: 1233: 1229: 1224: 1219: 1215: 1211: 1208:(5): 2882–5. 1207: 1203: 1199: 1197: 1193: 1189: 1180: 1172: 1168: 1163: 1158: 1154: 1150: 1146: 1139: 1131: 1127: 1122: 1117: 1113: 1109: 1106:(1): 109–15. 1105: 1101: 1097: 1095: 1086: 1078: 1074: 1069: 1064: 1060: 1056: 1051: 1046: 1042: 1038: 1034: 1026: 1018: 1014: 1009: 1004: 1000: 996: 992: 988: 984: 980: 976: 969: 954: 950: 946: 942: 938: 933: 928: 924: 920: 916: 912: 908: 901: 899: 890: 886: 881: 876: 871: 866: 862: 858: 854: 847: 839: 835: 830: 825: 821: 817: 813: 809: 805: 803: 794: 792: 783: 779: 774: 769: 766:(2): 341–52. 765: 761: 757: 755: 746: 744: 735: 731: 727: 723: 719: 713: 709: 705: 701: 694: 692: 683: 679: 674: 669: 665: 661: 658:(1): 173–84. 657: 653: 649: 647: 638: 634: 626: 625: 612: 611:Filamentation 606: 601: 594: 589: 588: 582: 579: 577: 576: 570: 566: 561: 558: 552: 549: 546:PBPs bind to 539: 536: 531: 529: 525: 517: 513: 504: 502: 498: 494: 493:filamentation 490: 489:peptidoglycan 480: 478: 473: 472: 460: 458: 451: 447: 443: 439: 435: 431: 427: 423: 419: 411: 397: 393: 387: 383: 377: 373: 367: 363: 357: 353: 347: 343: 337: 333: 327: 323: 317: 313: 307: 303: 299: 297: 293: 290: 287: 285: 281: 278: 274: 270: 267: 265: 261: 257: 253: 250: 247: 243: 238: 234: 231: 228: 226: 222: 219: 216: 214: 210: 206: 202: 197: 192: 181: 178: 176: 172: 169: 165: 161: 158: 156: 152: 148: 144: 141: 138: 134: 129: 125: 122: 119: 117: 113: 110: 107: 105: 101: 98: 95: 93: 89: 86: 83: 81: 77: 74: 71: 69: 65: 61: 57: 52: 47: 41: 37: 32: 19: 1315:. 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Index

Penicillin binding proteins

(PDB 3OC2)
PyMol
Pfam
PF00905
InterPro
IPR001460
OPM superfamily
195
OPM protein
5hlb
Membranome
541
Pfam
structures
ECOD
PDB
RCSB PDB
PDBe
PDBj
PDBsum
structure summary
Pfam
PF03717
InterPro
IPR005311
Pfam
structures
ECOD

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