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NADH peroxidase

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concentrations and concentrations of NADH that are saturating, NADH inhibits the peroxidase activity of the NADH peroxidase by converting the enzyme to an unstable intermediate. NAD behaves as an activator by reversing the equilibria that lead to the unstable intermediate, thus converting the enzyme
686:"Comparative study of the physiological roles of three peroxidases (NADH peroxidase, Alkyl hydroperoxide reductase and Thiol peroxidase) in oxidative stress response, survival inside macrophages and virulence of Enterococcus faecalis" 908:
Crane EJ, Parsonage D, Poole LB, Claiborne A (October 1995). "Analysis of the kinetic mechanism of enterococcal NADH peroxidase reveals catalytic roles for NADH complexes with both oxidized and two-electron-reduced enzyme forms".
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Crane EJ, Yeh JI, Luba J, Claiborne A (August 2000). "Analysis of the kinetic and redox properties of the NADH peroxidase R303M mutant: correlation with the crystal structure".
981:"The Streptococcus faecalis oxidases for reduced diphosphopyridine nucleotide. III. Isolation and properties of a flavin peroxidase for reduced diphosphopyridine nucleotide" 201: 446:
H. Glu-14 participates in forming the tight dimer interface that limits solvent accessibility, important for maintaining the oxidation state of the sulfenic acid.
1072:
Hansson L, Häggström MH (1984). "Effects of growth conditions on the activities of superoxide dismutase and NADH-oxidase/NADH-peroxidase inStreptococcus lactis".
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The actual function of NADH peroxidases and oxidases in plants is still unclear, but they could act in early signaling of oxidative stress through producing H
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Crane EJ, Parsonage D, Claiborne A (February 1996). "The active-site histidine-10 of enterococcal NADH peroxidase is not essential for catalytic activity".
738:"Heterogeneity among the flavin-containing NADH peroxidases of group D streptococci. Analysis of the enzyme from Streptococcus faecalis ATCC 9790" 1391: 1261: 434:
His10 of the NADH peroxidase is located near the N-terminus of the R1 helix within the FAD-binding site. One of the oxygen atoms of Cys42-SO
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and to Cys42 N terminus. The His10 functions in part to stabilize the unusual Cys42-SOH redox center. Arg303 also stabilizes the Cys42-SO
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Gordon J, Holman RA, McLeod JW (October 1953). "Further observations on the production of hydrogen peroxide by anaerobic bacteria".
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Chen SX, Schopfer P (March 1999). "Hydroxyl-radical production in physiological reactions. A novel function of peroxidase".
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La Carbona S, Sauvageot N, Giard JC, Benachour A, Posteraro B, Auffray Y, Sanguinetti M, Hartke A (December 2007).
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intermediate has been observed, however, and the precise details of Cys42-SOH reduction have not been elucidated.
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by the Cys42-thiolate, yielding E•NADH; and (4) rate-limiting hydride transfer from bound NADH, regenerating EH
140: 1618: 145: 630:. Second, the enzyme presents an additional mechanism for regeneration of the NAD essential to the strictly 449: 311: 25: 631: 373: 277: 225: 481:
The kinetic mechanism of the wild-type peroxidase involves (1) NADH reduction of E(FAD, Cys42-SOH) to EH
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Four residues essential for active site functionality in NADH Peroxidase, Adapted from PDB 2NPX
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with respect to chain fold and location as well as conformation of the prosthetic group FAD
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of the peroxide bond to catalyze the two-electron reduction of hydrogen peroxide to water.
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is unique in that it utilizes the Cys42 thiol/sulfenic acid (-SH/-SOH) redox couple in the
121: 8: 1572: 1213: 1160: 1143: 615: 353: 97: 63: 56: 1763: 1505: 1364: 1165: 1089: 798: 781: 715: 997: 980: 841: 754: 737: 176: 1200: 1196: 1124: 1054: 1040: 1002: 961: 926: 890: 855: 845: 803: 759: 707: 702: 685: 342: 261: 152: 32: 1169: 1144:"Effect of Aluminium on Oxidative Stress Related Enzymes Activities in Barley Roots" 1093: 719: 668:
formation by NADH peroxidase and oxidase in cell wall loosening and reconstruction.
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Alignment of NADH, FAD and Cysteine 42 in NADH Peroxidase, Adapted from PDB 2NPX
180: 1747: 1636: 1577: 1244: 384: 196: 1757: 1541: 1500: 1395: 171: 1120: 1490: 1204: 1128: 1006: 894: 859: 711: 485:(FAD, Cys42-SH) in an initial priming step; (2) rapid binding of NADH to EH 338: 965: 930: 807: 763: 387:, specifically those acting on a peroxide as acceptor (peroxidases). The 30:
The structure of NADH peroxidase from Enterococcus faecalis. Adapted from
1714: 1649: 1485: 1312: 1058: 1049: 922: 249: 109: 1369: 1248: 1085: 315: 238: 957: 886: 36: 1688: 1662: 826:"Crystal Structures of Oxidized and Reduced Forms of NADH Peroxidase" 643: 439: 257: 1742: 1284: 618:
conditions and represents an enzymatic defense available against H
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of this organism. The enzyme may also protect against exogenous H
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The presumed function of NADH peroxidase is to inactivate H
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NADH eliminates potentially toxic hydrogen peroxide under
943: 1142:Ĺ imonoviÄŤová M, Tamás L, Huttová J, MistrĂ­k I (2004). 1731: 872: 779: 280: 782:"NADH binding site and catalysis of NADH peroxidase" 735: 427:The crystal structure of NADH peroxidase resembles 1106: 286: 1135: 832:. Methods in Enzymology. Vol. 353. pp.  780:Stehle T, Claiborne A, Schulz GE (January 1993). 1755: 1071: 598:to the kinetically active complex that reduces H 326:causes damage to essential cellular components. 660:An alternative role may include regulation of H 1456: 1229: 1022:"DPNH peroxidase: effector activities of DPN" 775: 773: 736:Miller H, Poole LB, Claiborne A (June 1990). 731: 729: 314:during glycerol metabolism or dismutation of 1182: 1065: 823: 413:nicotinamide adenine dinucleotide peroxidase 1100: 677: 1463: 1449: 1236: 1222: 819: 817: 770: 726: 581:Inhibitors include Ag, Cl, Co, Cu, Hg, NaN 310:generated within the cell, for example by 1176: 1159: 1048: 1013: 996: 972: 937: 901: 866: 797: 753: 701: 1019: 978: 456: 448: 814: 438:H is hydrogen-bonded both to the His10 405:diphosphopyridine nucleotide peroxidase 1756: 830:Redox Cell Biology and Genetics Part B 609: 1444: 1217: 465: 393:NADH:hydrogen-peroxide oxidoreductase 383:This enzyme belongs to the family of 395:. Other names in common use include 287:{\displaystyle \rightleftharpoons } 13: 1161:10.1023/B:BIOP.0000033454.95515.8a 799:10.1111/j.1432-1033.1993.tb19889.x 14: 1795: 1741: 1197:10.1046/j.1432-1327.1999.00199.x 703:10.1111/j.1365-2958.2007.05987.x 380:intermediate has been observed. 24: 281: 1: 1029:Biochem. Biophys. Res. Commun 998:10.1016/S0021-9258(18)64952-X 842:10.1016/S0076-6879(02)53035-4 755:10.1016/S0021-9258(19)38750-2 671: 1041:10.1016/0006-291X(77)91267-0 824:Yeh JI, Claiborne A (2002). 642:and contribute to bacterial 422: 312:glycerol-3-phosphate oxidase 7: 1470: 1020:Dolin MI (September 1977). 10: 1800: 1784:Enzymes of known structure 376:, however no discrete FADH 1627: 1619:Michaelis–Menten kinetics 1591: 1560: 1529: 1478: 1390: 1260: 470:The NADH peroxidase from 219: 207: 195: 190: 186: 170: 151: 139: 127: 115: 103: 91: 79: 74: 62: 50: 45: 23: 18: 1511:Diffusion-limited enzyme 1375:Iodothyronine deiodinase 391:of this enzyme class is 1769:NADPH-dependent enzymes 1380:Iodotyrosine deiodinase 1290:Cytochrome c peroxidase 1121:10.1002/path.1700660224 979:Dolin MI (March 1957). 632:fermentative metabolism 1774:NADH-dependent enzymes 1350:Horseradish peroxidase 1300:Glutathione peroxidase 462: 454: 288: 1604:Eadie–Hofstee diagram 1537:Allosteric regulation 1295:Eosinophil peroxidase 1280:Fatty-acid peroxidase 558:E•NADH + H → EH 472:Enterococcus faecalis 460: 452: 429:glutathione reductase 289: 1614:Lineweaver–Burk plot 1074:Current Microbiology 509:E + NADH → (EH 489:; (3) reduction of H 476:heterolytic cleavage 278: 923:10.1021/bi00043a016 610:Biological Function 333:of this enzyme are 1573:Enzyme superfamily 1506:Enzyme promiscuity 1365:Thyroid peroxidase 1148:Biologia Plantarum 1109:J Pathol Bacteriol 1086:10.1007/BF01626563 551:→ E•NADH + H 513:'•NAD)* → EH 501:. No discrete FADH 466:Reaction mechanism 463: 455: 352:, whereas its two 284: 1729: 1728: 1438: 1437: 958:10.1021/bi952347y 887:10.1021/bi000553m 851:978-0-12-182256-9 589:. At suboptimal H 532:+ NADH → EH 368:. It employs one 262:chemical reaction 235: 234: 231: 230: 134:metabolic pathway 1791: 1746: 1745: 1737: 1609:Hanes–Woolf plot 1552:Enzyme activator 1547:Enzyme inhibitor 1521:Enzyme catalysis 1465: 1458: 1451: 1442: 1441: 1275:NADPH peroxidase 1238: 1231: 1224: 1215: 1214: 1209: 1208: 1180: 1174: 1173: 1163: 1139: 1133: 1132: 1104: 1098: 1097: 1069: 1063: 1062: 1052: 1026: 1017: 1011: 1010: 1000: 976: 970: 969: 941: 935: 934: 917:(43): 14114–24. 905: 899: 898: 881:(34): 10353–64. 870: 864: 863: 821: 812: 811: 801: 777: 768: 767: 757: 733: 724: 723: 705: 681: 628:oxidative stress 517:'•NAD → EH 417:NADH2 peroxidase 293: 291: 290: 285: 188: 187: 39: 28: 16: 15: 1799: 1798: 1794: 1793: 1792: 1790: 1789: 1788: 1754: 1753: 1752: 1740: 1732: 1730: 1725: 1637:Oxidoreductases 1623: 1599:Enzyme kinetics 1587: 1583:List of enzymes 1556: 1525: 1496:Catalytic triad 1474: 1469: 1439: 1434: 1386: 1360:Myeloperoxidase 1355:Lactoperoxidase 1270:NADH peroxidase 1256: 1245:Oxidoreductases 1242: 1212: 1185:Eur. J. Biochem 1181: 1177: 1140: 1136: 1105: 1101: 1070: 1066: 1024: 1018: 1014: 977: 973: 942: 938: 906: 902: 871: 867: 852: 822: 815: 786:Eur. J. Biochem 778: 771: 748:(17): 9857–63. 734: 727: 682: 678: 674: 667: 663: 656: 652: 641: 637: 625: 621: 612: 605: 601: 596: 592: 588: 584: 576: 573:•NAD → EH 572: 565: 561: 554: 550: 546: 542: 535: 531: 524: 520: 516: 512: 504: 500: 496: 492: 488: 484: 468: 445: 437: 425: 409:NADH-peroxidase 397:DPNH peroxidase 389:systematic name 385:oxidoreductases 379: 365: 350: 346: 325: 321: 309: 305: 297: 279: 276: 275: 274: 270: 243:NADH peroxidase 41: 31: 19:NADH peroxidase 12: 11: 5: 1797: 1787: 1786: 1781: 1776: 1771: 1766: 1751: 1750: 1727: 1726: 1724: 1723: 1710: 1697: 1684: 1671: 1658: 1645: 1631: 1629: 1625: 1624: 1622: 1621: 1616: 1611: 1606: 1601: 1595: 1593: 1589: 1588: 1586: 1585: 1580: 1575: 1570: 1564: 1562: 1561:Classification 1558: 1557: 1555: 1554: 1549: 1544: 1539: 1533: 1531: 1527: 1526: 1524: 1523: 1518: 1513: 1508: 1503: 1498: 1493: 1488: 1482: 1480: 1476: 1475: 1468: 1467: 1460: 1453: 1445: 1436: 1435: 1433: 1432: 1427: 1422: 1417: 1412: 1407: 1401: 1399: 1388: 1387: 1385: 1384: 1383: 1382: 1377: 1367: 1362: 1357: 1352: 1347: 1346: 1345: 1340: 1335: 1330: 1325: 1320: 1315: 1310: 1297: 1292: 1287: 1282: 1277: 1272: 1266: 1264: 1258: 1257: 1241: 1240: 1233: 1226: 1218: 1211: 1210: 1175: 1154:(2): 261–266. 1134: 1099: 1080:(6): 345–351. 1064: 1035:(1): 393–400. 1012: 971: 936: 900: 865: 850: 813: 792:(1–2): 221–6. 769: 725: 696:(5): 1148–63. 690:Mol. Microbiol 675: 673: 670: 665: 661: 654: 650: 639: 635: 623: 619: 616:aerobic growth 611: 608: 603: 599: 594: 590: 586: 582: 579: 578: 574: 570: 567: 563: 559: 556: 552: 548: 544: 540: 537: 533: 529: 526: 522: 518: 514: 510: 502: 498: 494: 490: 486: 482: 467: 464: 443: 435: 424: 421: 401:NAD peroxidase 377: 363: 348: 344: 323: 319: 318:, before the H 307: 303: 300: 299: 295: 283: 272: 268: 233: 232: 229: 228: 223: 217: 216: 211: 205: 204: 199: 193: 192: 184: 183: 174: 168: 167: 156: 149: 148: 143: 137: 136: 131: 125: 124: 119: 113: 112: 107: 101: 100: 95: 89: 88: 83: 77: 76: 72: 71: 66: 60: 59: 54: 48: 47: 43: 42: 29: 21: 20: 9: 6: 4: 3: 2: 1796: 1785: 1782: 1780: 1779:Flavoproteins 1777: 1775: 1772: 1770: 1767: 1765: 1762: 1761: 1759: 1749: 1744: 1739: 1738: 1735: 1721: 1717: 1716: 1711: 1708: 1704: 1703: 1698: 1695: 1691: 1690: 1685: 1682: 1678: 1677: 1672: 1669: 1665: 1664: 1659: 1656: 1652: 1651: 1646: 1643: 1639: 1638: 1633: 1632: 1630: 1626: 1620: 1617: 1615: 1612: 1610: 1607: 1605: 1602: 1600: 1597: 1596: 1594: 1590: 1584: 1581: 1579: 1578:Enzyme family 1576: 1574: 1571: 1569: 1566: 1565: 1563: 1559: 1553: 1550: 1548: 1545: 1543: 1542:Cooperativity 1540: 1538: 1535: 1534: 1532: 1528: 1522: 1519: 1517: 1514: 1512: 1509: 1507: 1504: 1502: 1501:Oxyanion hole 1499: 1497: 1494: 1492: 1489: 1487: 1484: 1483: 1481: 1477: 1473: 1466: 1461: 1459: 1454: 1452: 1447: 1446: 1443: 1431: 1428: 1426: 1423: 1421: 1418: 1416: 1413: 1411: 1408: 1406: 1403: 1402: 1400: 1397: 1396:peroxiredoxin 1393: 1389: 1381: 1378: 1376: 1373: 1372: 1371: 1368: 1366: 1363: 1361: 1358: 1356: 1353: 1351: 1348: 1344: 1341: 1339: 1336: 1334: 1331: 1329: 1326: 1324: 1321: 1319: 1316: 1314: 1311: 1309: 1306: 1303: 1302: 1301: 1298: 1296: 1293: 1291: 1288: 1286: 1283: 1281: 1278: 1276: 1273: 1271: 1268: 1267: 1265: 1263: 1259: 1254: 1250: 1246: 1239: 1234: 1232: 1227: 1225: 1220: 1219: 1216: 1206: 1202: 1198: 1194: 1191:(3): 726–35. 1190: 1186: 1179: 1171: 1167: 1162: 1157: 1153: 1149: 1145: 1138: 1130: 1126: 1122: 1118: 1115:(2): 527–37. 1114: 1110: 1103: 1095: 1091: 1087: 1083: 1079: 1075: 1068: 1060: 1056: 1051: 1050:2027.42/22844 1046: 1042: 1038: 1034: 1030: 1023: 1016: 1008: 1004: 999: 994: 991:(1): 557–73. 990: 986: 985:J. Biol. Chem 982: 975: 967: 963: 959: 955: 952:(7): 2380–7. 951: 947: 940: 932: 928: 924: 920: 916: 912: 904: 896: 892: 888: 884: 880: 876: 869: 861: 857: 853: 847: 843: 839: 835: 831: 827: 820: 818: 809: 805: 800: 795: 791: 787: 783: 776: 774: 765: 761: 756: 751: 747: 743: 742:J. Biol. Chem 739: 732: 730: 721: 717: 713: 709: 704: 699: 695: 691: 687: 680: 676: 669: 658: 647: 645: 633: 629: 617: 607: 568: 557: 538: 527: 508: 507: 506: 479: 477: 473: 459: 451: 447: 441: 432: 430: 420: 418: 414: 410: 406: 402: 398: 394: 390: 386: 381: 375: 371: 367: 359: 355: 351: 340: 336: 332: 327: 317: 313: 266: 265: 264: 263: 259: 255: 251: 248: 244: 240: 227: 224: 222: 218: 215: 212: 210: 206: 203: 200: 198: 194: 189: 185: 182: 178: 175: 173: 172:Gene Ontology 169: 166: 163: 160: 157: 154: 150: 147: 144: 142: 138: 135: 132: 130: 126: 123: 120: 118: 114: 111: 110:NiceZyme view 108: 106: 102: 99: 96: 94: 90: 87: 84: 82: 78: 73: 70: 67: 65: 61: 58: 55: 53: 49: 44: 38: 34: 27: 22: 17: 1715:Translocases 1712: 1699: 1686: 1673: 1660: 1650:Transferases 1647: 1634: 1491:Binding site 1304: 1269: 1188: 1184: 1178: 1151: 1147: 1137: 1112: 1108: 1102: 1077: 1073: 1067: 1032: 1028: 1015: 988: 984: 974: 949: 946:Biochemistry 945: 939: 914: 911:Biochemistry 910: 903: 878: 875:Biochemistry 874: 868: 829: 789: 785: 745: 741: 693: 689: 679: 659: 648: 613: 585:, Pb, and SO 580: 480: 469: 433: 426: 416: 412: 408: 404: 400: 396: 392: 382: 328: 301: 267:NADH + H + H 242: 236: 98:BRENDA entry 1486:Active site 1262:1.11.1.1-14 1249:peroxidases 86:IntEnz view 46:Identifiers 1758:Categories 1689:Isomerases 1663:Hydrolases 1530:Regulation 1370:Deiodinase 672:References 626:-mediated 543:•NADH* + H 331:substrates 316:superoxide 239:enzymology 155:structures 122:KEGG entry 69:9032-24-0 1764:EC 1.11.1 1568:EC number 1392:1.11.1.15 644:virulence 521:+ NAD + H 440:imidazole 423:Structure 294:NAD + 2 H 282:⇌ 258:catalyzes 75:Databases 1592:Kinetics 1516:Cofactor 1479:Activity 1285:Catalase 1205:10103001 1170:34802416 1129:13118459 1094:27660179 1007:13416259 895:10956025 860:12078517 720:40046805 712:17971082 562:•NAD + H 370:cofactor 354:products 252:) is an 250:1.11.1.1 226:proteins 214:articles 202:articles 159:RCSB PDB 57:1.11.1.1 40:​. 1748:Biology 1702:Ligases 1472:Enzymes 966:8652580 931:7578008 808:8425532 764:2161844 181:QuickGO 146:profile 129:MetaCyc 64:CAS no. 1734:Portal 1676:Lyases 1203:  1168:  1127:  1092:  1059:199166 1057:  1005:  964:  929:  893:  858:  848:  806:  762:  718:  710:  536:•NADH* 415:, and 341:, and 329:The 3 254:enzyme 209:PubMed 191:Search 177:AmiGO 165:PDBsum 105:ExPASy 93:BRENDA 81:IntEnz 52:EC no. 1628:Types 1255:1.11) 1166:S2CID 1090:S2CID 1025:(PDF) 834:44–54 716:S2CID 577:+ NAD 256:that 141:PRIAM 1720:list 1713:EC7 1707:list 1700:EC6 1694:list 1687:EC5 1681:list 1674:EC4 1668:list 1661:EC3 1655:list 1648:EC2 1642:list 1635:EC1 1201:PMID 1125:PMID 1055:PMID 1003:PMID 962:PMID 927:PMID 891:PMID 856:PMID 846:ISBN 804:PMID 760:PMID 708:PMID 360:and 356:are 335:NADH 260:the 241:, a 221:NCBI 162:PDBe 117:KEGG 37:2NPX 1305:GPX 1193:doi 1189:260 1156:doi 1117:doi 1082:doi 1045:hdl 1037:doi 993:doi 989:225 954:doi 919:doi 883:doi 838:doi 794:doi 790:211 750:doi 746:265 698:doi 374:FAD 358:NAD 237:In 197:PMC 153:PDB 33:PDB 1760:: 1253:EC 1247:: 1199:. 1187:. 1164:. 1152:48 1150:. 1146:. 1123:. 1113:66 1111:. 1088:. 1078:10 1076:. 1053:. 1043:. 1033:78 1031:. 1027:. 1001:. 987:. 983:. 960:. 950:35 948:. 925:. 915:34 913:. 889:. 879:39 877:. 854:. 844:. 836:. 828:. 816:^ 802:. 788:. 784:. 772:^ 758:. 744:. 740:. 728:^ 714:. 706:. 694:66 692:. 688:. 657:. 646:. 606:. 569:EH 539:EH 528:EH 419:. 411:, 407:, 403:, 399:, 372:, 337:, 247:EC 179:/ 35:: 1736:: 1722:) 1718:( 1709:) 1705:( 1696:) 1692:( 1683:) 1679:( 1670:) 1666:( 1657:) 1653:( 1644:) 1640:( 1464:e 1457:t 1450:v 1430:6 1425:5 1420:4 1415:3 1410:2 1405:1 1398:) 1394:( 1343:8 1338:7 1333:6 1328:5 1323:4 1318:3 1313:2 1308:1 1251:( 1237:e 1230:t 1223:v 1207:. 1195:: 1172:. 1158:: 1131:. 1119:: 1096:. 1084:: 1061:. 1047:: 1039:: 1009:. 995:: 968:. 956:: 933:. 921:: 897:. 885:: 862:. 840:: 810:. 796:: 766:. 752:: 722:. 700:: 666:2 664:O 662:2 655:2 653:O 651:2 640:2 638:O 636:2 624:2 622:O 620:2 604:2 602:O 600:2 595:2 593:O 591:2 587:4 583:3 575:2 571:2 566:O 564:2 560:2 555:O 553:2 549:2 547:O 545:2 541:2 534:2 530:2 525:O 523:2 519:2 515:2 511:2 503:2 499:2 495:2 493:O 491:2 487:2 483:2 444:3 436:3 378:2 366:O 364:2 362:H 349:2 347:O 345:2 343:H 339:H 324:2 322:O 320:2 308:2 306:O 304:2 298:O 296:2 273:2 271:O 269:2 245:(

Index


PDB
2NPX
EC no.
1.11.1.1
CAS no.
9032-24-0
IntEnz
IntEnz view
BRENDA
BRENDA entry
ExPASy
NiceZyme view
KEGG
KEGG entry
MetaCyc
metabolic pathway
PRIAM
profile
PDB
RCSB PDB
PDBe
PDBsum
Gene Ontology
AmiGO
QuickGO
PMC
articles
PubMed
articles

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